About: Single stranded loops of quadruplex DNA as key benchmark for testing nucleic acids force fields

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	We have carried out a set of explicit solvent molecular dynamics (MD) simulations on two DNA quadruplex (G-DNA) molecules. The main purpose of the paper was testing of the capability of the MD simulation technique to describe single-stranded topologies of G-DNA loops, which represent a very challenging task for computational methods. We have carried out a set of explicit solvent molecular dynamics (MD) simulations on two DNA quadruplex (G-DNA) molecules. The main purpose of the paper was testing of the capability of the MD simulation technique to describe single-stranded topologies of G-DNA loops, which represent a very challenging task for computational methods. (en)
Title	Single stranded loops of quadruplex DNA as key benchmark for testing nucleic acids force fields Single stranded loops of quadruplex DNA as key benchmark for testing nucleic acids force fields (en)
skos:prefLabel	Single stranded loops of quadruplex DNA as key benchmark for testing nucleic acids force fields Single stranded loops of quadruplex DNA as key benchmark for testing nucleic acids force fields (en)
skos:notation	RIV/68081707:_____/09:00329244!RIV10-MSM-68081707
http://linked.open...avai/riv/aktivita	P Z
http://linked.open...avai/riv/aktivity	P(1QS500040581), P(IAA400040802), P(LC06030), Z(AV0Z50040507), Z(AV0Z50040702), Z(MSM0021622413)
http://linked.open...iv/cisloPeriodika	9
http://linked.open...vai/riv/dodaniDat	2010
http://linked.open...aciTvurceVysledku	Šponer, Jiří Špačková, Naďa
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Biofyzikální ústav AV ČR, v. v. i.
http://linked.open...dnocenehoVysledku	341419
http://linked.open...ai/riv/idVysledku	RIV/68081707:_____/09:00329244
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	DNA quadruplex; MD simulation; force fields (en)
http://linked.open.../riv/klicoveSlovo	DNA quadruplex MD simulation force fields
http://linked.open...odStatuVydavatele	US - Spojené státy americké
http://linked.open...ontrolniKodProRIV	[0B2E08429B2B]
http://linked.open...i/riv/nazevZdroje	Journal of Chemical Theory and Computation
http://linked.open...in/vavai/riv/obor	BO
http://linked.open...ichTvurcuVysledku	2 (xsd:int)
http://linked.open...cetTvurcuVysledku	8 (xsd:int)
http://linked.open...vavai/riv/projekt	Metallodrugs, design and mechansim of action Biomolecular centre Structure, dynamics, and reaction mechanism of catalytic RNA
http://linked.open...UplatneniVysledku	2009
http://linked.open...v/svazekPeriodika	5
http://linked.open...iv/tvurceVysledku	Šponer, Jiří Cheatham III, T. E. Koča, J. Špačková, Naděžda Orozco, M. Fadrná, E. Kulinski, T. Sarzynska, J.
http://linked.open...ain/vavai/riv/wos	000269488300031
http://linked.open...n/vavai/riv/zamer	Biophysics of dynamic structures and functions of biological systems Genome and epigenome: 1D and 3D Structure, Dynamics, Interactions with Proteins and Functions Proteiny v metabolismu a při interakci organismů s prostředím
issn	1549-9618
number of pages	17 (xsd:int)
is http://linked.open...avai/riv/vysledek of	Single stranded loops of quadruplex DNA as key benchmark for testing nucleic acids force fields Single stranded loops of quadruplex DNA as key benchmark for testing nucleic acids force fields Single stranded loops of quadruplex DNA as key benchmark for testing nucleic acids force fields Single stranded loops of quadruplex DNA as key benchmark for testing nucleic acids force fields

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