About: SeqGrapheR Tool for visualization and analysi of clusters of repetitive sequences from next generation sequencing data

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About: SeqGrapheR Tool for visualization and analysi of clusters of repetitive sequences from next generation sequencing data Goto Sponge NotDistinct Permalink

An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	R package that provides a simple graphical user interface for interactive visualization of sequence clusters using the GGObi program and the R package rggobi [18,19]. SeqGrapheR also enables the selection of groups of reads from a graph and simultaneous viewing of the graph layout, sequence assembly results and similarity searches. SeqGrapheR tool is used for elucidation of the variability of repetitive elements and for reconstruction repetitive element consensus sequences. R package that provides a simple graphical user interface for interactive visualization of sequence clusters using the GGObi program and the R package rggobi [18,19]. SeqGrapheR also enables the selection of groups of reads from a graph and simultaneous viewing of the graph layout, sequence assembly results and similarity searches. SeqGrapheR tool is used for elucidation of the variability of repetitive elements and for reconstruction repetitive element consensus sequences. (en)
Title	SeqGrapheR Tool for visualization and analysi of clusters of repetitive sequences from next generation sequencing data SeqGrapheR Tool for visualization and analysi of clusters of repetitive sequences from next generation sequencing data (en)
skos:prefLabel	SeqGrapheR Tool for visualization and analysi of clusters of repetitive sequences from next generation sequencing data SeqGrapheR Tool for visualization and analysi of clusters of repetitive sequences from next generation sequencing data (en)
skos:notation	RIV/60077344:_____/10:00347472!RIV11-MSM-60077344
http://linked.open...avai/riv/aktivita	P Z
http://linked.open...avai/riv/aktivity	P(LC06004), P(OC10037), Z(AV0Z50510513)
http://linked.open...vai/riv/dodaniDat	2011
http://linked.open...aciTvurceVysledku	Novák, Petr
http://linked.open.../riv/druhVysledku	R - Software
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...onomickeParametry	Zvýšení efektivity při zpracovávání sekvenačních dat
http://linked.open...titaPredkladatele	Biologické centrum AV ČR, v. v. i.
http://linked.open...dnocenehoVysledku	287002
http://linked.open...ai/riv/idVysledku	RIV/60077344:_____/10:00347472
http://linked.open...terniIdentifikace	SeqGrapheR ev.č UMBR-2010/1
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	Graph; Repetitive DNA; Next generation sequencing (en)
http://linked.open.../riv/klicoveSlovo	Next generation sequencing Graph Repetitive DNA
http://linked.open...ontrolniKodProRIV	[2DACED92A2CE]
http://linked.open...okalizaceVysledku	http://w3lamc.umbr.cas.cz/lamc/resources.php
http://linked.open...in/vavai/riv/obor	EB
http://linked.open...ichTvurcuVysledku	1 (xsd:int)
http://linked.open...cetTvurcuVysledku	1 (xsd:int)
http://linked.open...vavai/riv/projekt	Integration of research activities to study the plant genome Investigation of plant repetitive DNA by bioinformatic analysis of next-generation sequencing data
http://linked.open...UplatneniVysledku	2010
http://linked.open...echnickeParametry	Software implementovany jako R knihovna (www.r-project.org)
http://linked.open...iv/tvurceVysledku	Novák, Petr
http://linked.open...avai/riv/vlastnik	Biologicke Centrum AV ČR, v.v
http://linked.open...itiJinymSubjektem	N - Nabytí licence není nutné (výsledek není licencován)
http://linked.open...n/vavai/riv/zamer	Výzkum struktury genetické informace rostlin a jejich patogenů na molekulární úrovni, indukce a analýza cílených změn genomu a plastomu a studium fotosyntetických procesů a projevů dědičnosti v interakci s prostředím a patogeny
is http://linked.open...avai/riv/vysledek of	SeqGrapheR Tool for visualization and analysi of clusters of repetitive sequences from next generation sequencing data SeqGrapheR Tool for visualization and analysi of clusters of repetitive sequences from next generation sequencing data SeqGrapheR Tool for visualization and analysi of clusters of repetitive sequences from next generation sequencing data

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