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| Description
| - The project presents integration efforts of several top laboratories from the Czech Republic focused on the study of structure and function of plant nuclear genome. A special attention will be paid on the plasticity and evolution of genomic DNA sequencesand on the study of molecular mechanisms controlling growth and differentiation of plant cells and tissues. The research will be realised on several key models, which have a strong impact in genetics, plant breeding, and reproduction (especially Arabidopsis thaliana, white campion, and wheat). The project is based on two strategic pillars: bioinformatics (formation of databases of transcriptome, satelite, and retroelement sequences) and DNA library approach (construction of sophisticated libraries based on laser technologies and robotic screening). (en)
- Projekt představuje integraci našich špičkových akademických pracovišť soustředěných na studium struktury a funkce rostlinného genomu. Zvláštní pozornost bude věnována flexibilitě a evoluci genomových sekvencí DNA a studiu molekulárních mechanismů, kteréřídí růst a diferenciaci rostlinných buněk. Výzkum bude realizován na několika modelech, které mají zásadní impakt v rostlinné genetice a šlechtění i reprodukční biologii (zejména Arabidopsis, Silene, Vicia a Triticum). Základní etapou projektu je vytvoření bioinformační databáze transkriptomických dat, satelitních sekvencí DNA a retroelementů. Jednotící technologií je konstrukce a skrínování specifických genomových knihoven.
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| Title
| - Integration of research activities to study the plant genome (en)
- Integrovaný výzkum rostlinného genomu
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| skos:notation
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| http://linked.open...avai/cep/aktivita
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| http://linked.open...kovaStatniPodpora
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| http://linked.open...ep/celkoveNaklady
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| http://linked.open...datumDodatniDoRIV
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| http://linked.open...i/cep/druhSouteze
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| http://linked.open...ep/duvernostUdaju
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| http://linked.open.../cep/fazeProjektu
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| http://linked.open...ai/cep/hlavniObor
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| http://linked.open...hodnoceniProjektu
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| http://linked.open...vai/cep/kategorie
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| http://linked.open.../cep/klicovaSlova
| - genom - buněčné jádro - krytosemenné rostliny - genová exprese - epigenetika - transcriptom - genové knihovny - genetické mapování (en)
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| http://linked.open...ep/partnetrHlavni
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| http://linked.open...inujicichPrijemcu
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| http://linked.open...cep/pocetPrijemcu
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| http://linked.open...ocetSpoluPrijemcu
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| http://linked.open.../pocetVysledkuRIV
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| http://linked.open...enychVysledkuVRIV
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| http://linked.open...lneniVMinulemRoce
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| http://linked.open.../prideleniPodpory
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| http://linked.open...iciPoslednihoRoku
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| http://linked.open...atUdajeProjZameru
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| http://linked.open.../vavai/cep/soutez
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| http://linked.open...usZobrazovaneFaze
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| http://linked.open...ai/cep/typPojektu
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| http://linked.open...ep/ukonceniReseni
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| http://linked.open.../cep/vedlejsiObor
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| http://linked.open...ep/zahajeniReseni
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| http://linked.open...jektu+dodavatelem
| - During the period 2006-2011 we have achieved a lot of exciting results in the field of plant genomics, including molecular structure of nuclear and mitochondrial genome, mapping and cloning of important genes. Application of new technologies enabled to characterize functional domains of chromosomes and their evolution during domestification. (en)
- Byly vypracovány nové postupy a připraveny unikátní materiály, které usnadňují analýzu molekulární struktury genomů rostlin, včetně mapování a klonování významných genů. Aplikace nových metod umožnila získání původních poznatků o anatomii genomů, včetně funkčních domén chromosomů a o změnách součástí genomů, které doprovázely evoluci současných druhů rostlin a domestikaci kulturních plodin. (cs)
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| http://linked.open...tniCyklusProjektu
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| is http://linked.open...vavai/riv/projekt
of | - Telomere repeat binding protein variants show distinct kinetics and energetic nature of DNA-protein interaction
- Fate of telomere binding proteins after the loss of telomeres
- In vivo localisation of Arabidopsis thaliana Myb-like proteins
- Mapping of interaction domains of putative plant telomere preteins
- Consumption of Brussels sprouts protects peripheral human lymphocytes against 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhlP) and oxidative DNA-damage: results of a controlled human intervention trial
- Efficient somatic embryogenesis in sugar beet (Beta vulgaris L.) breeding lines
- A novel resource for genomics of Triticeae: BAC library specific for the short arm of rye (Secale cereale L.) chromosome 1R (1RS)
- Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley
- A physical map of the 1-gigabase bread wheat chromosome 3B
- A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R
- ONLINE TOOLS FOR PRESENTATION AND ANALYSIS OF PLANT MICROARRAY DATA
- Roots of angiosperm formins: The evolutionary history of plant FH2 domain-containing proteins
- Rapid repair of DNA double strand breaks in Arabidopsis thaliana is dependent on proteins involved in chromosome structure maintenance
- Cytoskeleton-Associated Large RNP Complexes in Tobacco Male Gametophyte (EPPs) Are Associated with Ribosomes and Are Involved in Protein Synthesis, Processing, and Localization
- AtbZIP34 is required for Arabidopsis pollen wall patterning and the control of several metabolic pathways in developing pollen
- DNA ligase 1 deficient plants display severe growth defects and delayed repair of both DNA single and double strand breaks
- Gene Content and Virtual Gene Order of Barley Chromosome 1H1,[C],[W],[OA]
- 2C or not 2C: a closer look at cell nuclei and their DNA content
- Generating resources for genomics of wheat homoeologous chromosome group 3: 3AS- and 3DS-specific BAC libraries
- Chromosome Genomics in the Triticeae
- Transcription profiles of mitochondrial genes correlate with mitochondrial DNA haplotypes in a natural population of Silene vulgaris
- Development of Chromosome-Specific BAC Resources for Genomics of Bread Wheat
- Nuclear Genome Size: Are We Getting Closer?
- Isolated chromosomes as a new and efficient source of DArT markers for the saturation of genetic maps
- Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing
- Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm Silene latifolia
- The plant formin AtFH4 interacts with both actin and microtubules, and contains a newly identified microtubule-binding domain
- Efficient biolistic transformation of the moss Physcomitrella patens
- Cloning of transgenic tobacco BY-2 cells; an efficient method to analyse and reduce high natural heterogeneity of transgene expression
- Plant antigens cross-react with rat polyclonal antibodies against KLH-conjugated peptides.
- Computational identification of root hair-specific genes in Arabidopsis
- Successive silencing of tandem reporter genes in potato (Solanum tuberosum) over 5 years of vegetative propagation
- Origin and Evolution of Telomeres
- Chromosome landmarks as tools to study the genome of Arabidopsis thaliana
- Genus Silene (Caryophyllaceae) - Evolutionary Diversification and Sex Chromosome Formation
- Microsatellite accumulation on the Y chromosome in Silene latifolia
- Independent origin of sex chromosomes in two species of the genus Silene
- The asymmetric meiosis in pentaploid dogroses (Rosa sect. Caninae) is associated with a skewed distribution of rRNA gene families in the gametes
- Cytogenetics for the study of telomere function in plants
- Structure-function relationships in telomerase genes
- The role of repetitive DNA in structure and evolution of sex chromosomes in plants
- Accumulation of Y-specific satellite DNAs during the evolution of Rumex acetosa sex chromosomes
- Contrasting evolutionary dynamics between angiosperm and mammalian genomes
- New horizons of genomic in situ hybridization
- Frequent silencing of rDNA loci on the univalent-forming genomes contrasts with their stable expression on the bivalent-forming genomes in polyploid dogroses (Rosa sect. caninae)
- Molekulární mechanismy rezistence k těžkým kovům a jejich akumulace v rostlinách
- siRNA-mediated methylation of Arabidopsis telomeres
- Silene latifolia: The classical model to study heteromorphic sex chromosomes
- Single integration and spread of a Copia-like sequence nested in rDNA intergenic spacers of Allium cernuum (Alliaceae)
- Sex chromosomes and sex determination pathway dynamics in plant and animal models
- Telomere maintenance in liquid crystalline chromosomes of dinoflagellates
- Reduction of heteroduplex formation in PCR amplification
- BAC Libraries from Wheat Chromosome 7D: Efficient Tool for Positional Cloning of Aphid Resistance Genes
- Analysis of two abundant, highly related satellites in the allotetraploid Nicotiana arentsii using double-strand conformation polymorphism analysis and sequencing
- Frequent Gene Movement and Pseudogene Evolution Is Common to the Large and Complex Genomes of Wheat, Barley, and Their Relatives
- GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein, is involved in somatic homologous recombination in Arabidopsis
- Integration of genetic and physical maps of the chickpea (Cicer arietinum L.) genome using flow-sorted chromosomes
- Interkingdom protein domain fusion: the case of an antimicrobial protein in potato (Solanum tuberosum)
- Molecular analysis of T-DNA insertion mutants identified putative regulatory elements in the atTERT gene
- Paramutation of tobacco transgenes by small RNA-mediated transcriptional gene silencing
- SAFE KEEPING THE MESSAGE: mRNP Complexes Tweaking after Transcription
- Safe Keeping the Message - mRNP Complexes Tweaking after Transcription
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