About: Specific ion effects for proteins in solutions and related biologically relevant systems.

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About: Specific ion effects for proteins in solutions and related biologically relevant systems. Goto Sponge Distinct Permalink

An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Projekt, within Data Space : linked.opendata.cz associated with source document(s)

Attributes	Values
rdf:type	http://linked.opendata.cz/ontology/domain/vavai/Projekt
rdfs:seeAlso	http://www.isvav.cz/projectDetail.do?rowId=GA203/08/0114
Description	The mechanism of hydration of ions and interaction of ions with biomolecules play an important role in many natural and biotechnological processes. We plan within this proposal to combine computational and experimental tools with the aim to obtain a funda (en) Mechanismus hydratace iontů a interakce iontů s biomolekulami hrají důležitou roli v mnoha přírodních a biotechnologických procesech. V rámci tohoto projektu plánujeme kombinovat výpočetní a experimentální nástroje s cílem dojít k základnímu porozumnění t
Title	Specific ion effects for proteins in solutions and related biologically relevant systems. (en) Specifické iontové efekty pro proteiny v roztocích a podobné biologicky relevantní systémy.
skos:notation	GA203/08/0114
http://linked.open...avai/cep/aktivita	Standard projects
http://linked.open...kovaStatniPodpora	http://linked.opendata.cz/resource/domain/vavai/projekt/GA203%2F08%2F0114/celkovaStatniPodpora
http://linked.open...ep/celkoveNaklady	http://linked.opendata.cz/resource/domain/vavai/projekt/GA203%2F08%2F0114/celkoveNaklady
http://linked.open...datumDodatniDoRIV	2014-01-30 (xsd:date)
http://linked.open...i/cep/druhSouteze	VS - Veřejná soutěž ve výzkumu a vývoji
http://linked.open...ep/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open.../cep/fazeProjektu	92537427
http://linked.open...ai/cep/hlavniObor	CF - Fyzikální chemie a teoretická chemie
http://linked.open...hodnoceniProjektu	V - Vynikající výsledky (s mezinárodním významem apod.). Zároveň byly splněny cíle a předpokládané výsledky uvedené ve smlouvě / rozhodnutí o poskytnutí podpory.
http://linked.open...vai/cep/kategorie	ZV - Základní výzkum
http://linked.open.../cep/klicovaSlova	salt; ions; enzymatic; reactions; membranes; molecular; dynamics; fluorescence; spectroscopy (en)
http://linked.open...ep/partnetrHlavni	Ústav organické chemie a biochemie AV ČR, v. v. i.
http://linked.open...inujicichPrijemcu	0 (xsd:int)
http://linked.open...cep/pocetPrijemcu	1 (xsd:int)
http://linked.open...ocetSpoluPrijemcu	3 (xsd:int)
http://linked.open.../pocetVysledkuRIV	99 (xsd:int)
http://linked.open...enychVysledkuVRIV	99 (xsd:int)
http://linked.open...lneniVMinulemRoce	2012-03-30 (xsd:date)
http://linked.open.../prideleniPodpory	http://linked.opendata.cz/resource/domain/vavai/cep/prideleniPodpory/203%2F08%2F0114
http://linked.open...iciPoslednihoRoku	2012
http://linked.open...atUdajeProjZameru	2013
http://linked.open.../vavai/cep/soutez	SGA02008GA-ST
http://linked.open...usZobrazovaneFaze	DUU
http://linked.open...ai/cep/typPojektu	P - Projekt výzkumu a vývoje financovaný ze státního rozpočtu
http://linked.open...ep/ukonceniReseni	2012-12-31 (xsd:date)
http://linked.open.../cep/vedlejsiObor	BO - Biofyzika CE - Biochemie
http://linked.open...ep/zahajeniReseni	2008-01-01 (xsd:date)
http://linked.open...jektu+dodavatelem	Four teams from different research instituions participated at the solution of this broad and ambicious, albeit realistic grant project. The solution significantly broadened the knowledge on interaction of ions with proteins. Results were published in 61 papers in recognized impacted journals .Finances were used according to the plan. (en) Jedná se o rozsáhlý ambiciozní, nicméně realistický grantový projekt, na jehož řešení se podílely 4 pracovní týmy. Řešení významným způsobem přispělo k rozšíření znalostí o interakcích iontů s proteiny. Charakteristika výsledků v závěrečné kartě je adekvátní. Výsledky byly publikovány v 61 článcích v impaktovaných renomovaných časopisech. Finance byly využívány v souladu s plánem. (cs)
http://linked.open...tniCyklusProjektu	ZBBBKU
http://linked.open.../cep/klicoveSlovo	salt dynamics enzymatic fluorescence ions membranes molecular reactions
is http://linked.open...vavai/riv/projekt of	Transforming Anion Instability into Stability: Contrasting Photoionization of Three Protonation Forms of the Phosphate Ion upon Moving into Water Engineering Enzyme Stability and Resistance to an Organic Cosolvent by Modification of Residues in the Access Tunnel Interaction of Organic Solvents with Protein Structures at Protein-Solvent Interface Martini Force Field Parameters for Glycolipids Organic Co-solvents Affect Activity, Stability and Enantioselectivity of Haloalkane Dehalogenases Specific ion binding to nonpolar surface patches of proteins Hydronium and hydroxide at the interface between water and hydrophobic media Cation-specific interactions with carboxylate in amino acid and acetate aqueous solutions: X-ray absorption and ab initio calculations Hofmeister series and specific interactions of charged headgroups with aqueous ions Ion-specific interactions between halides and basic amino acids in water Specificity of ion-protein interactions: Complementary and competitive effects of tetrapropylammonium, guanidinium, sulfate, and chloride ions Behavior of hydroxide at the water/vapor interface Molecular model of a cell plasma membrane with an asymmetric multicomponent composition: Water permeation and ion effects The molecular origin of like-charge arginine-arginine pairing in water Effects of alkali cations and halide anions on the DOPC lipid membrane Microsolvation of the acetate anion [CH3CO2-(H2O)n, n=1-3]: A photoelectron spectroscopy and ab initio computational study Ionization energies of aqueous nucleic acids: Photoelectron spectroscopy of pyridine nucleosides and ab initio calculations Ion specific effects of sodium and potassium on the catalytic activity of HIV-1 protease Large variations in the propensity of aqueous oxychlorine anions for the solution/vapor interface Ion Specificity at the Peptide Bond: Molecular Dynamics Simulations of N-Methylacetamide in Aqueous Salt Solutions Hydrogen Forms in Water by Proton Transfer to a Distorted Electron Dielectric Interpretation of Specificity of Ion Pairing in Water Dynamics of Electron Localization in Warn versus Cold Water Clusters Reversal of Hofmeister Ordering for Pairing of NH4+ vs Alkylated Ammonium Cations with Halide Anions in Water Effect of Association with Sulfate on the Electrophoretic Mobility of Polyarginine and Polylysine Effect of Water Polarizability on the Properties of Solutions of Polyvalent Ions: Simulations of Aqueous Sodium Sulfate with Different Force Fields Specific Interactions of Ammonium Functionalities in Amino Acids with Aqueous Fluoride and Iodide Electrons in Cold Water Clusters: An ab Initio Molecular Dynamics Study of Localization and Metastable States Behavior of the Eigen Form of Hydronium at the Air/Water Interface Behavior of beta-Amyloid 1-16 at the Air-Water Interface at Varying pH by Nonlinear Spectroscopy and Molecular Dynamics Simulations Engineering Robust and Efficient Protein Catalysts Energetic Origin of Proton Affinity to the Air/Water Interface Guanidinium Cations Pair with Positively Charged Arginine Side Chains in Water From a localized H3O radical to a delocalized H3O+ . . .e- solvent-separated pair by sequential hydration Ionization of Purine Tautomers in Nucleobases, Nucleosides, and Nucleotides: From the Gas Phase to the Aqueous Environment Inhibition of Human Serine Racemase, an Emerging Target for Medicinal Chemistry Like-Charge Guanidinium Pairing from Molecular Dynamics and Ab Initio Calculations Molecular mechanisms of the effects of organic solvents on activity of haloalkane dehalogenases Molecular mechanisms of the effects of organic solvents on activity of haloalkane dehalogenases Oxidized Phosphatidylcholines Facilitate Phospholipid Flip-Flop in Liposomes Orientational Dependence of the Affinity of Guanidinium Ions to the Water Surface Stereoselectivity and conformational stability of haloalkane dehalogenase DbjA from Bradyrhizobium japonicum USDA110: the effect of pH and temperature Urea and Guanidinium Induced Denaturation of a Trp-Cage Miniprotein Accurate Description of Aqueous Carbonate Ions: An Effective Polarization Model Verified by Neutron Scattering Behavior of 4-Hydroxynonenal in Phospholipid Membranes Effect of organic solvents on structure and function of haloalkane dehalogenases Construction of pollutant-degrading bacteria by protein and metabolic engineering Computer-Assisted Enzyme Engineering by Modification of Tunnels, Channels and Gates. Complex Ion Effects on Polypeptide Conformational Stability: Chloride and Sulfate Salts of Guanidiniumand Tetrapropylammonium Computational Modelling of Catalytic Properties and Modified Substrates of Fungal B-N-Acetylhexosaminidases Investigation of Ligand Passage in Proteins Investigation of Ligand Passage in Proteins Expansion of Access Tunnels and Active-Site Cavities Influence Activity of Haloalkane Dehalogenases in Organic Cosolvents. Pathways and Mechanisms for Product Release in the Engineered Haloalkane Dehalogenases Explored using Classical and Random Acceleration Molecular Dynamics Simulations. Chiral Aliphatic Hydroxy Compounds in Nature: a Review of Biological Functions and Practical Applications.

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