About: An unexpected gene cluster for downstream degradation of alkylphenols in Sphingomonas sp strain TTNP3

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	In silico analysis of nucleotide sequences flanking the recently found hydroquinone dioxygenase in Sphingomonas sp. strain TTNP3 revealed a gene cluster that encodes a hydroquinone catabolic pathway. In addition to the two open-reading frames encoding the recently characterized hydroquinone dioxygenase, the cluster consisted of six open-reading frames. We were able to express the three open-reading frames, hqdC, hqdD, and hqdE, and demonstrated that the three gene products, HqdC, HqdD, and HqdE had 4-hydroxymuconic semialdehyde dehydrogenase, maleylacetate reductase, and intradiol dioxygenase activity, respectively. Surprisingly, the gene cluster showed similarities to functionally related clusters found in members of the alpha- and gamma-proteobacteria rather than to those found in other members of the genus Sphingomonas sensu latu. In silico analysis of nucleotide sequences flanking the recently found hydroquinone dioxygenase in Sphingomonas sp. strain TTNP3 revealed a gene cluster that encodes a hydroquinone catabolic pathway. In addition to the two open-reading frames encoding the recently characterized hydroquinone dioxygenase, the cluster consisted of six open-reading frames. We were able to express the three open-reading frames, hqdC, hqdD, and hqdE, and demonstrated that the three gene products, HqdC, HqdD, and HqdE had 4-hydroxymuconic semialdehyde dehydrogenase, maleylacetate reductase, and intradiol dioxygenase activity, respectively. Surprisingly, the gene cluster showed similarities to functionally related clusters found in members of the alpha- and gamma-proteobacteria rather than to those found in other members of the genus Sphingomonas sensu latu. (en)
Title	An unexpected gene cluster for downstream degradation of alkylphenols in Sphingomonas sp strain TTNP3 An unexpected gene cluster for downstream degradation of alkylphenols in Sphingomonas sp strain TTNP3 (en)
skos:prefLabel	An unexpected gene cluster for downstream degradation of alkylphenols in Sphingomonas sp strain TTNP3 An unexpected gene cluster for downstream degradation of alkylphenols in Sphingomonas sp strain TTNP3 (en)
skos:notation	RIV/68378050:_____/12:00387875!RIV13-AV0-68378050
http://linked.open...avai/predkladatel	Ústav molekulární genetiky AV ČR, v. v. i.
http://linked.open...avai/riv/aktivita	I P
http://linked.open...avai/riv/aktivity	I, P(1M0520)
http://linked.open...iv/cisloPeriodika	3
http://linked.open...vai/riv/dodaniDat	2013
http://linked.open...aciTvurceVysledku	Vlček, Čestmír Fousek, Jan
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Ústav molekulární genetiky AV ČR, v. v. i.
http://linked.open...dnocenehoVysledku	122025
http://linked.open...ai/riv/idVysledku	RIV/68378050:_____/12:00387875
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	hydroquinone; degradation; Sphingomonas; nonylphenol; bisphenol A (en)
http://linked.open.../riv/klicoveSlovo	degradation Sphingomonas bisphenol A hydroquinone nonylphenol
http://linked.open...odStatuVydavatele	DE - Spolková republika Německo
http://linked.open...ontrolniKodProRIV	[802A5E5C128E]
http://linked.open...i/riv/nazevZdroje	Applied Microbiology and Biotechnology
http://linked.open...in/vavai/riv/obor	EB
http://linked.open...ichTvurcuVysledku	2 (xsd:int)
http://linked.open...cetTvurcuVysledku	8 (xsd:int)
http://linked.open...vavai/riv/projekt	Center for Applied Genomics
http://linked.open...UplatneniVysledku	2012
http://linked.open...v/svazekPeriodika	93
http://linked.open...iv/tvurceVysledku	Fousek, Jan Vlček, Čestmír Corvini, P.F.X. Dobrowinski, H. Gabriel, F.L.P. Kohler, H.P.E. Kolvenbach, B. A. Schaffer, A.
http://linked.open...ain/vavai/riv/wos	000300282500039
issn	0175-7598
number of pages	10 (xsd:int)
http://bibframe.org/vocab/doi	10.1007/s00253-011-3451-8
is http://linked.open...avai/riv/vysledek of	An unexpected gene cluster for downstream degradation of alkylphenols in Sphingomonas sp strain TTNP3

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