About: Bioinformatic analysis of the L polymerase gene leads to discrimination of new rhabdoviruses

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	Conserved block III of the RNA polymerase L gene is predicted to be essential for RNA polymerase function of cytorhabdoviruses and may be a target in exploringevolutionary relationships among rhabdoviruses. Sequence comparison of an amplified segment of thepolymerase gene isolated from six English ivy samples revealed its high similarity with known plant cytorhabdoviruses. Lettuce yellow mottle viruswas recognized as a closely related virus with 79.6% aa identity in the amplified region of the CB2 isolate and around 70% aa identity for the CB1, CB6 and CB18 isolates. The CB11 and CB16 isolates show a closer relationship to Raspberry vein chlorosis virus, with 75 and 69% aa identity, respectively. These data in combination with phylogenetic analyses resulted in discrimination of four new rhabdoviruses. The names Ivy latent viruses 1, 2, 3 and 4 (IvLV1, IvLV2, IvLV3 and IvLV4) are proposed for these viruses. Conserved block III of the RNA polymerase L gene is predicted to be essential for RNA polymerase function of cytorhabdoviruses and may be a target in exploringevolutionary relationships among rhabdoviruses. Sequence comparison of an amplified segment of thepolymerase gene isolated from six English ivy samples revealed its high similarity with known plant cytorhabdoviruses. Lettuce yellow mottle viruswas recognized as a closely related virus with 79.6% aa identity in the amplified region of the CB2 isolate and around 70% aa identity for the CB1, CB6 and CB18 isolates. The CB11 and CB16 isolates show a closer relationship to Raspberry vein chlorosis virus, with 75 and 69% aa identity, respectively. These data in combination with phylogenetic analyses resulted in discrimination of four new rhabdoviruses. The names Ivy latent viruses 1, 2, 3 and 4 (IvLV1, IvLV2, IvLV3 and IvLV4) are proposed for these viruses. (en)
Title	Bioinformatic analysis of the L polymerase gene leads to discrimination of new rhabdoviruses Bioinformatic analysis of the L polymerase gene leads to discrimination of new rhabdoviruses (en)
skos:prefLabel	Bioinformatic analysis of the L polymerase gene leads to discrimination of new rhabdoviruses Bioinformatic analysis of the L polymerase gene leads to discrimination of new rhabdoviruses (en)
skos:notation	RIV/60077344:_____/12:00382315!RIV13-GA0-60077344
http://linked.open...avai/predkladatel	Biologické centrum AV ČR, v. v. i.
http://linked.open...avai/riv/aktivita	I P Z
http://linked.open...avai/riv/aktivity	I, P(GAP501/12/1747), Z(AV0Z50510513)
http://linked.open...iv/cisloPeriodika	7-8
http://linked.open...vai/riv/dodaniDat	2013
http://linked.open...aciTvurceVysledku	Petrzik, Karel
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Biologické centrum AV ČR, v. v. i.
http://linked.open...dnocenehoVysledku	125063
http://linked.open...ai/riv/idVysledku	RIV/60077344:_____/12:00382315
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	Cytorhabdovirus; RNA polymerase; Hedera helix (en)
http://linked.open.../riv/klicoveSlovo	Cytorhabdovirus RNA polymerase Hedera helix
http://linked.open...odStatuVydavatele	DE - Spolková republika Německo
http://linked.open...ontrolniKodProRIV	[12C8D068BF20]
http://linked.open...i/riv/nazevZdroje	Journal of Phytopathology - Phytopathologische Zeitschrift
http://linked.open...in/vavai/riv/obor	EE
http://linked.open...ichTvurcuVysledku	1 (xsd:int)
http://linked.open...cetTvurcuVysledku	1 (xsd:int)
http://linked.open...vavai/riv/projekt	Diversity and distribution of viruses across lichen species
http://linked.open...UplatneniVysledku	2012
http://linked.open...v/svazekPeriodika	160
http://linked.open...iv/tvurceVysledku	Petrzik, Karel
http://linked.open...ain/vavai/riv/wos	000305897900009
http://linked.open...n/vavai/riv/zamer	Výzkum struktury genetické informace rostlin a jejich patogenů na molekulární úrovni, indukce a analýza cílených změn genomu a plastomu a studium fotosyntetických procesů a projevů dědičnosti v interakci s prostředím a patogeny
issn	0931-1785
number of pages	5 (xsd:int)
http://bibframe.org/vocab/doi	10.1111/j.1439-0434.2012.01919.x
is http://linked.open...avai/riv/vysledek of	Bioinformatic analysis of the L polymerase gene leads to discrimination of new rhabdoviruses

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