About: Architecture Model for Approximate Tandem Repeat Detection

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An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	Algorithms for biological sequence analysis, such as approximate string matching or algorithms for identification of sequence patterns supporting specific structural elements, present good opportunities for hardware acceleration. Implementation of these algorithms often results in architectures based on multidimensional arrays of computing elements. Mapping effectively these computational structures on FPGAs remains one of the challenging problems. This paper focuses on a specific hardware architecture for detection of approximate tandem repeats in sequences. We show how to create a parametrized architecture model combined with an automatic technique that can determine appropriate circuit dimensions with respect to input task parameters and the target platform properties. Algorithms for biological sequence analysis, such as approximate string matching or algorithms for identification of sequence patterns supporting specific structural elements, present good opportunities for hardware acceleration. Implementation of these algorithms often results in architectures based on multidimensional arrays of computing elements. Mapping effectively these computational structures on FPGAs remains one of the challenging problems. This paper focuses on a specific hardware architecture for detection of approximate tandem repeats in sequences. We show how to create a parametrized architecture model combined with an automatic technique that can determine appropriate circuit dimensions with respect to input task parameters and the target platform properties. (en)
Title	Architecture Model for Approximate Tandem Repeat Detection Architecture Model for Approximate Tandem Repeat Detection (en)
skos:prefLabel	Architecture Model for Approximate Tandem Repeat Detection Architecture Model for Approximate Tandem Repeat Detection (en)
skos:notation	RIV/00216305:26230/11:PU96097!RIV13-GA0-26230___
http://linked.open...avai/predkladatel	Fakulta informačních technologií
http://linked.open...avai/riv/aktivita	P S Z
http://linked.open...avai/riv/aktivity	P(GA204/08/1560), S, Z(MSM0021630528)
http://linked.open...vai/riv/dodaniDat	2013
http://linked.open...aciTvurceVysledku	Martínek, Tomáš
http://linked.open.../riv/druhVysledku	D - Článek ve sborníku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Vysoké učení technické v Brně / Fakulta informačních technologií
http://linked.open...dnocenehoVysledku	187017
http://linked.open...ai/riv/idVysledku	RIV/00216305:26230/11:PU96097
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	Approximate tandem repeat, Architecture model, Automated mapping, FPGA, (en)
http://linked.open.../riv/klicoveSlovo	Approximate tandem repeat Architecture model Automated mapping FPGA
http://linked.open...ontrolniKodProRIV	[4A7BD9645251]
http://linked.open...v/mistoKonaniAkce	Santa Monica, California
http://linked.open...i/riv/mistoVydani	Santa Monica, California
http://linked.open...i/riv/nazevZdroje	22nd IEEE International Conference on Application-specific Systems, Architectures and Processors
http://linked.open...in/vavai/riv/obor	IN
http://linked.open...ichTvurcuVysledku	1 (xsd:int)
http://linked.open...cetTvurcuVysledku	2 (xsd:int)
http://linked.open...vavai/riv/projekt	In vitro and in silico identification of non-canonical DNA structures in genomic DNA sequences
http://linked.open...UplatneniVysledku	2011
http://linked.open...iv/tvurceVysledku	Lexa, Matej Martínek, Tomáš
http://linked.open...vavai/riv/typAkce	WRD - Světová
http://linked.open.../riv/zahajeniAkce	2011-09-11 (xsd:date)
http://linked.open...n/vavai/riv/zamer	Výzkum informačních technologií z hlediska bezpečnosti
number of pages	4 (xsd:int)
http://bibframe.org/vocab/doi	10.1109/ASAP.2011.6043277
http://purl.org/ne...btex#hasPublisher	IEEE Computer Society
https://schema.org/isbn	978-1-4577-1290-6
http://localhost/t...ganizacniJednotka	26230
is http://linked.open...avai/riv/vysledek of	Architecture Model for Approximate Tandem Repeat Detection

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