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  • This paper presents a new method of specific cavity analysis in protein molecules. Long-term biochemical research has the discovery that protein molecule behaviour depends on the existence of cavities (tunnels) leading from the inside of the molecule to its surface. Previous methods of tunnel computation were based on space rasterization. Our approach is based on computational geometry and uses Voronoi diagram and Delaunay triangulation. Our method computes tunnels with better quality in reasonable computational time. The proposed algorithm was implemented and tested on several real protein molecules and is expected to be used in various applications in protein modelling and analysis. This is an interesting example of applying computational geometry principles to practical problems.
  • This paper presents a new method of specific cavity analysis in protein molecules. Long-term biochemical research has the discovery that protein molecule behaviour depends on the existence of cavities (tunnels) leading from the inside of the molecule to its surface. Previous methods of tunnel computation were based on space rasterization. Our approach is based on computational geometry and uses Voronoi diagram and Delaunay triangulation. Our method computes tunnels with better quality in reasonable computational time. The proposed algorithm was implemented and tested on several real protein molecules and is expected to be used in various applications in protein modelling and analysis. This is an interesting example of applying computational geometry principles to practical problems. (en)
Title
  • Computation of tunnels in protein molecules using Delaunay triangulation
  • Computation of tunnels in protein molecules using Delaunay triangulation (en)
skos:prefLabel
  • Computation of tunnels in protein molecules using Delaunay triangulation
  • Computation of tunnels in protein molecules using Delaunay triangulation (en)
skos:notation
  • RIV/00216224:14330/07:00020120!RIV10-GA0-14330___
http://linked.open...avai/riv/aktivita
http://linked.open...avai/riv/aktivity
  • P(GA201/07/0927), P(LC06008)
http://linked.open...vai/riv/dodaniDat
http://linked.open...aciTvurceVysledku
http://linked.open.../riv/druhVysledku
http://linked.open...iv/duvernostUdaju
http://linked.open...titaPredkladatele
http://linked.open...dnocenehoVysledku
  • 414596
http://linked.open...ai/riv/idVysledku
  • RIV/00216224:14330/07:00020120
http://linked.open...riv/jazykVysledku
http://linked.open.../riv/klicovaSlova
  • tunnels; protein molecule; Delaunay triangulation (en)
http://linked.open.../riv/klicoveSlovo
http://linked.open...ontrolniKodProRIV
  • [C9EA3B12B459]
http://linked.open...v/mistoKonaniAkce
  • Plzeň
http://linked.open...i/riv/mistoVydani
  • Plzeň
http://linked.open...i/riv/nazevZdroje
  • Journal of WSCG
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http://linked.open...vavai/riv/projekt
http://linked.open...UplatneniVysledku
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  • Beneš, Petr
  • Medek, Petr
  • Sochor, Jiří
http://linked.open...vavai/riv/typAkce
http://linked.open.../riv/zahajeniAkce
number of pages
http://purl.org/ne...btex#hasPublisher
  • Západočeská univerzita v Plzni
https://schema.org/isbn
  • 978-80-86943-00-8
http://localhost/t...ganizacniJednotka
  • 14330
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