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Description
  • Z trajektorie vzniklé ze simulace molekulové dynamiky proteinu MUP-I byly vypočteny parametry popisující vnitřní pohyby v molekule proteinu. (cs)
  • Investigation of the protein of mouse urine has shown that it consists predominantly of a group of closely related proteins termed the Major Urinary Proteins (MUPs). These are acidic proteins (pI values from 4.2 to 4.7) with molecular masses of approximately 19 kDa. The MUPs are associated with pheromonally active ligands including relatively tightly bound 2-sec-butyl-4,5-dihydrothiazole. Thus MUPs may serve as a model of proteins binding small, hydrophobic ligands that are known to possess the capability of chemical signaling. Structure of MUP-I was determined crystallographically. The X-ray structures of MUP-I with and without ligand were taken and hydrogens, counter-ions and box of explicit water molecules were added. The system was minimized, heated and equilibrated and then the molecular dynamics was ran. From whole trajectory a 6ns-long part was taken and used for further analysis of internal motions of MUP-I. Correlation functions and frequency dependent order parameters have been calculated.Al
  • Investigation of the protein of mouse urine has shown that it consists predominantly of a group of closely related proteins termed the Major Urinary Proteins (MUPs). These are acidic proteins (pI values from 4.2 to 4.7) with molecular masses of approximately 19 kDa. The MUPs are associated with pheromonally active ligands including relatively tightly bound 2-sec-butyl-4,5-dihydrothiazole. Thus MUPs may serve as a model of proteins binding small, hydrophobic ligands that are known to possess the capability of chemical signaling. Structure of MUP-I was determined crystallographically. The X-ray structures of MUP-I with and without ligand were taken and hydrogens, counter-ions and box of explicit water molecules were added. The system was minimized, heated and equilibrated and then the molecular dynamics was ran. From whole trajectory a 6ns-long part was taken and used for further analysis of internal motions of MUP-I. Correlation functions and frequency dependent order parameters have been calculated.Al (en)
Title
  • Analysis of Internal Motion from Molecular Dynamics of Major Urinary Protein I.
  • Analysis of Internal Motion from Molecular Dynamics of Major Urinary Protein I. (en)
  • Analýza vnitřních pohybů z molekulové dynamiky proteinu MUP I (cs)
skos:prefLabel
  • Analysis of Internal Motion from Molecular Dynamics of Major Urinary Protein I.
  • Analysis of Internal Motion from Molecular Dynamics of Major Urinary Protein I. (en)
  • Analýza vnitřních pohybů z molekulové dynamiky proteinu MUP I (cs)
skos:notation
  • RIV/00216224:14310/04:00011147!RIV08-MSM-14310___
http://linked.open.../vavai/riv/strany
  • 20-20
http://linked.open...avai/riv/aktivita
http://linked.open...avai/riv/aktivity
  • P(LN00A016)
http://linked.open...vai/riv/dodaniDat
http://linked.open...aciTvurceVysledku
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http://linked.open...iv/duvernostUdaju
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  • 554223
http://linked.open...ai/riv/idVysledku
  • RIV/00216224:14310/04:00011147
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  • molecular dynamics; MUP (en)
http://linked.open.../riv/klicoveSlovo
http://linked.open...ontrolniKodProRIV
  • [09FEDAEC8859]
http://linked.open...v/mistoKonaniAkce
  • Linz, Austria
http://linked.open...i/riv/mistoVydani
  • Linz
http://linked.open...i/riv/nazevZdroje
  • Abstract of the VIth Central European NMR Symposium
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http://linked.open...vavai/riv/projekt
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http://linked.open...iv/tvurceVysledku
  • Novák, Petr
  • Sklenář, Vladimír
  • Žídek, Lukáš
  • Macek, Pavel
http://linked.open...vavai/riv/typAkce
http://linked.open.../riv/zahajeniAkce
number of pages
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  • Institut fur Organische Chemie der Johannes Keppler Universitat, Linz, Austria
http://localhost/t...ganizacniJednotka
  • 14310
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