About: On generating benchmark datasets for evaluation of segmentation and tracking algorithms in fluorescence microscopy

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An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	In fluorescence microscopy, the proper evaluation of image segmentation and tracking algorithms is still an open problem. As the ground truth for cell image data (and measurements on them) is not available in most experiments, the outputs of different image analysis methods can hardly be verified or compared to each other. We created a toolbox that can generate 3D digital phantoms of specific cellular components along with their corresponding images degraded by specific optics and electronics. The images can represent static scenes (fixed cell) as well as time-lapse sequences (living cells). Such synthetically generated images can serve as a benchmark dataset for measuring the quality of various segmentation and tracking algorithms. In fluorescence microscopy, the proper evaluation of image segmentation and tracking algorithms is still an open problem. As the ground truth for cell image data (and measurements on them) is not available in most experiments, the outputs of different image analysis methods can hardly be verified or compared to each other. We created a toolbox that can generate 3D digital phantoms of specific cellular components along with their corresponding images degraded by specific optics and electronics. The images can represent static scenes (fixed cell) as well as time-lapse sequences (living cells). Such synthetically generated images can serve as a benchmark dataset for measuring the quality of various segmentation and tracking algorithms. (en)
Title	On generating benchmark datasets for evaluation of segmentation and tracking algorithms in fluorescence microscopy On generating benchmark datasets for evaluation of segmentation and tracking algorithms in fluorescence microscopy (en)
skos:prefLabel	On generating benchmark datasets for evaluation of segmentation and tracking algorithms in fluorescence microscopy On generating benchmark datasets for evaluation of segmentation and tracking algorithms in fluorescence microscopy (en)
skos:notation	RIV/00216224:14330/13:00066770!RIV14-GA0-14330___
http://linked.open...avai/predkladatel	Fakulta informatiky
http://linked.open...avai/riv/aktivita	P
http://linked.open...avai/riv/aktivity	P(GBP302/12/G157)
http://linked.open...vai/riv/dodaniDat	2014
http://linked.open...aciTvurceVysledku	Svoboda, David
http://linked.open.../riv/druhVysledku	O - Ostatní výsledky nezařaditelné do žádného z výše uvedených druhů výsledku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Masarykova univerzita / Fakulta informatiky
http://linked.open...dnocenehoVysledku	93719
http://linked.open...ai/riv/idVysledku	RIV/00216224:14330/13:00066770
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	simulation; benchmark datasets; image processing; fluorescence microscopy (en)
http://linked.open.../riv/klicoveSlovo	image processing simulation benchmark datasets fluorescence microscopy
http://linked.open...ontrolniKodProRIV	[51B43CFF104F]
http://linked.open...in/vavai/riv/obor	JD
http://linked.open...ichTvurcuVysledku	1 (xsd:int)
http://linked.open...cetTvurcuVysledku	1 (xsd:int)
http://linked.open...vavai/riv/projekt	Dynamics and Organization of Chromosomes in the Cell Cycle and during Differentiation under Normal and Pathological Conditions
http://linked.open...UplatneniVysledku	2013
http://linked.open...iv/tvurceVysledku	Svoboda, David
http://localhost/t...ganizacniJednotka	14330

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