. "Mitchell, Jonathan" . . . . . . "Pasi, Marco" . . . "We present the results of microsecond molecular dynamics simulations carried out by the ABC group of laboratories on a set of B-DNA oligomers containing the 136 distinct tetranucleotide base sequences. We demonstrate that the resulting trajectories have extensively sampled the conformational space accessible to B-DNA at room temperature. We confirm that base sequence effects depend strongly not only on the specific base pair step, but also on the specific base pairs that flank each step. Beyond sequence effects on average helical parameters and conformational fluctuations, we also identify tetranucleotide sequences that oscillate between several distinct conformational substates. By analyzing the conformation of the phosphodiester backbones, it is possible to understand for which sequences these substates will arise, and what impact they will have on specific helical parameters."@en . "I, P(ED1.1.00/02.0068), P(GA14-21893S), P(GAP208/11/1822)" . "RIV/00216224:14740/14:00077975" . . "Maddocks, John H." . "0305-1048" . "muABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA"@en . . "10.1093/nar/gku855" . "Case, David A." . . "Beveridge, David" . "muABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA" . "000347689500044" . "Dans, Pablo D." . "Petkevi\u010Di\u00FCt\u00E9, Daiva" . . "Cheatham III., Thomas" . . "\u0160pa\u010Dkov\u00E1, Na\u010Fa" . "http://nar.oxfordjournals.org/content/early/2014/09/26/nar.gku855.full" . "Laughton, Charles" . "muABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA"@en . "Nucleic Acids Research" . "Lavery, Richard" . . "Orozco, Modesto" . . . . "14740" . "12"^^ . "19" . . "30911" . . "1"^^ . . . "Osman, Roman" . "Lanka\u0161, Filip" . "muABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA" . "P\u00E9rez, Alberto" . "42" . "19"^^ . "Bishop, Thomas C." . "BASE-PAIR; RECOGNITION; CONFORMATIONS; SIMULATIONS; BACKBONE; STEPS; OLIGONUCLEOTIDES; FLUCTUATIONS; FLEXIBILITY; DODECAMER"@en . "\u0160poner, Ji\u0159\u00ED" . "Jayaram, B." . . "GB - Spojen\u00E9 kr\u00E1lovstv\u00ED Velk\u00E9 Brit\u00E1nie a Severn\u00EDho Irska" . "[61FEF51C6424]" . "Zakrzewska, Krystyna" . . . . "We present the results of microsecond molecular dynamics simulations carried out by the ABC group of laboratories on a set of B-DNA oligomers containing the 136 distinct tetranucleotide base sequences. We demonstrate that the resulting trajectories have extensively sampled the conformational space accessible to B-DNA at room temperature. We confirm that base sequence effects depend strongly not only on the specific base pair step, but also on the specific base pairs that flank each step. Beyond sequence effects on average helical parameters and conformational fluctuations, we also identify tetranucleotide sequences that oscillate between several distinct conformational substates. By analyzing the conformation of the phosphodiester backbones, it is possible to understand for which sequences these substates will arise, and what impact they will have on specific helical parameters." . "RIV/00216224:14740/14:00077975!RIV15-MSM-14740___" .