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Statements

Subject Item
n2:RIV%2F67985556%3A_____%2F14%3A00438032%21RIV15-TA0-67985556
rdf:type
skos:Concept n17:Vysledek
rdfs:seeAlso
http://zoi.utia.cas.cz/node/805
dcterms:description
This package contains GenEx software library for analysis of FISH microscopy image. The purpose of this library is to detect round cell nuclei in the DAPI channel and fluorescence signals contained therein and to evaluate their shape and intensity parameters. It can process arbitrary number of signal channels. Main purpose of the library is to take the input set of 2D images from wide-field fluorescence miscroscope, to detect objects contained in these images, to filter them using either a simple filter or a classifier. Finally, the parameters of the objects are provided in the form of a CSV file for further analysis. Simple graphical editor is included to provide expert input for object classification. The library has been coded in Java on top of the ImageJ library and may be used either as an ImageJ plugin or as a Java package. The pilot application for this library has been in a diagnostics system for mosaic form of the Turner syndrom (chromosomal abnormality in which part of the X chromosomes is absent or has other abnormalities), developed in the frame of the TA01010931 project, supported by Technology Agency of the Czech Republic. This package contains GenEx software library for analysis of FISH microscopy image. The purpose of this library is to detect round cell nuclei in the DAPI channel and fluorescence signals contained therein and to evaluate their shape and intensity parameters. It can process arbitrary number of signal channels. Main purpose of the library is to take the input set of 2D images from wide-field fluorescence miscroscope, to detect objects contained in these images, to filter them using either a simple filter or a classifier. Finally, the parameters of the objects are provided in the form of a CSV file for further analysis. Simple graphical editor is included to provide expert input for object classification. The library has been coded in Java on top of the ImageJ library and may be used either as an ImageJ plugin or as a Java package. The pilot application for this library has been in a diagnostics system for mosaic form of the Turner syndrom (chromosomal abnormality in which part of the X chromosomes is absent or has other abnormalities), developed in the frame of the TA01010931 project, supported by Technology Agency of the Czech Republic.
dcterms:title
GenEx Software library for object detection in genetical analysis evaluation GenEx Software library for object detection in genetical analysis evaluation
skos:prefLabel
GenEx Software library for object detection in genetical analysis evaluation GenEx Software library for object detection in genetical analysis evaluation
skos:notation
RIV/67985556:_____/14:00438032!RIV15-TA0-67985556
n3:aktivita
n15:P n15:I
n3:aktivity
I, P(TA01010931)
n3:dodaniDat
n8:2015
n3:domaciTvurceVysledku
n11:5081068 n11:2365030
n3:druhVysledku
n14:R
n3:duvernostUdaju
n12:S
n3:ekonomickeParametry
The purpose of this library is to detect round cell nuclei in the DAPI channel and fluorescence signals contained therein and to evaluate their shape and intensity parameters.
n3:entitaPredkladatele
n7:predkladatel
n3:idSjednocenehoVysledku
18122
n3:idVysledku
RIV/67985556:_____/14:00438032
n3:interniIdentifikace
ZOI-soft-0438032
n3:jazykVysledku
n18:eng
n3:klicovaSlova
image processing; microscopy; segmentation; object detection; object parameters; Java; ImageJ
n3:klicoveSlovo
n9:Java n9:object%20detection n9:image%20processing n9:ImageJ n9:segmentation n9:microscopy n9:object%20parameters
n3:kontrolniKodProRIV
[2D3BA314993F]
n3:obor
n13:JC
n3:pocetDomacichTvurcuVysledku
2
n3:pocetTvurcuVysledku
3
n3:projekt
n5:TA01010931
n3:rokUplatneniVysledku
n8:2014
n3:technickeParametry
This package contains GenEx software library for analysis of FISH microscopy image.
n3:tvurceVysledku
Kuneš, M. Kovář, Bohumil Schier, Jan
n3:vlastnik
n7:vlastnikVysledku
n3:vyuzitiJinymSubjektem
n16:N