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Statements

Subject Item
n2:RIV%2F67985556%3A_____%2F11%3A00355696%21RIV11-MSM-67985556
rdf:type
n7:Vysledek skos:Concept
dcterms:description
A method for counting yeast colonies in images of Petri dishes, based on the Fast Radial Transform by Loy and Zelinsky, is introduced and evaluated in the paper. Images, produced by a general-purpose imaging setup, are considered. The performance of the method has been evaluated with a test set of 245 images. The images typically contained between 10 and 70 colonies per dish, with relative coverage of the dish less than 10% of the area. The average counting error (missed colonies) on this set was under 4%. A tool, implementing the method, has been developed in Matlab. The tool provides a batch mode for processing of larger image sets prepared beforehand in the darkroom and it automates the process of counting as much as possible. It is available for download or can be requested from the authors of the paper, in both cases free on charge. A method for counting yeast colonies in images of Petri dishes, based on the Fast Radial Transform by Loy and Zelinsky, is introduced and evaluated in the paper. Images, produced by a general-purpose imaging setup, are considered. The performance of the method has been evaluated with a test set of 245 images. The images typically contained between 10 and 70 colonies per dish, with relative coverage of the dish less than 10% of the area. The average counting error (missed colonies) on this set was under 4%. A tool, implementing the method, has been developed in Matlab. The tool provides a batch mode for processing of larger image sets prepared beforehand in the darkroom and it automates the process of counting as much as possible. It is available for download or can be requested from the authors of the paper, in both cases free on charge.
dcterms:title
Automated counting of yeast colonies using the Fast Radial Transform algorithm Automated counting of yeast colonies using the Fast Radial Transform algorithm
skos:prefLabel
Automated counting of yeast colonies using the Fast Radial Transform algorithm Automated counting of yeast colonies using the Fast Radial Transform algorithm
skos:notation
RIV/67985556:_____/11:00355696!RIV11-MSM-67985556
n7:predkladatel
n11:ico%3A67985556
n3:aktivita
n4:Z n4:P
n3:aktivity
P(1M0567), Z(AV0Z10750506)
n3:dodaniDat
n9:2011
n3:domaciTvurceVysledku
n20:5081068 n20:2365030
n3:druhVysledku
n14:D
n3:duvernostUdaju
n5:S
n3:entitaPredkladatele
n22:predkladatel
n3:idSjednocenehoVysledku
187539
n3:idVysledku
RIV/67985556:_____/11:00355696
n3:jazykVysledku
n18:eng
n3:klicovaSlova
Colony counter; Yeast colonies; Image segmentation; Fast radial transform
n3:klicoveSlovo
n13:Image%20segmentation n13:Colony%20counter n13:Yeast%20colonies n13:Fast%20radial%20transform
n3:kontrolniKodProRIV
[57E6DDEA7B43]
n3:mistoKonaniAkce
Řím
n3:mistoVydani
Lisabon
n3:nazevZdroje
BIOSTEC 2011 4th International Joint Conference on Biomedical Engineering Systems and Technologies
n3:obor
n10:IN
n3:pocetDomacichTvurcuVysledku
2
n3:pocetTvurcuVysledku
2
n3:projekt
n12:1M0567
n3:rokUplatneniVysledku
n9:2011
n3:tvurceVysledku
Kovář, Bohumil Schier, Jan
n3:typAkce
n17:WRD
n3:zahajeniAkce
2011-01-26+01:00
n3:zamer
n21:AV0Z10750506
s:numberOfPages
6
n19:hasPublisher
SciTePress
n15:isbn
978-989-8425-36-2