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Statements

Subject Item
n2:RIV%2F61989592%3A15310%2F13%3A33147795%21RIV14-GA0-15310___
rdf:type
skos:Concept n9:Vysledek
rdfs:seeAlso
http://link.springer.com/article/10.1007%2Fs00425-012-1749-0
dcterms:description
In recent years, there has been a significant increase in the number of completely sequenced plant genomes. The comparison of fully sequenced genomes allows for identification of new gene family members, as well as comprehensive analysis of gene family evolution. The aldehyde dehydrogenase (ALDH) gene superfamily comprises a group of enzymes involved in the NAD+- or NADP+-dependent conversion of various aldehydes to their corresponding carboxylic acids. ALDH enzymes are involved in processing many aldehydes that serve as biogenic intermediates in a wide range of metabolic pathways. In addition, many of these enzymes function as 'aldehyde scavengers' by removing reactive aldehydes generated during the oxidative degradation of lipid membranes, also known as lipid peroxidation. Plants and animals share many ALDH families, and many genes are highly conserved between these two evolutionarily distinct groups. Conversely, both plants and animals also contain unique ALDH genes and families. Herein we carried out genome-wide identification of ALDH genes in a number of plant species -including Arabidopsis thaliana (thale crest), Chlamydomonas reinhardtii (unicellular algae), Oryza sativa (rice), Physcomitrella patens (moss), Vitis vinifera (grapevine) and Zea mays (maize). These data were then combined with previous analysis of Populus trichocarpa (poplar tree), Selaginella moellindorffii (gemmiferous spikemoss), Sorghum bicolor (sorghum) and Volvox carteri (colonial algae) for a comprehensive evolutionary comparison of the plant ALDH superfamily. As a result, newly identified genes can be more easily analyzed and gene names can be assigned according to current nomenclature guidelines; our goal is to clarify previously confusing and conflicting names and classifications that might confound results and prevent accurate comparisons between studies. In recent years, there has been a significant increase in the number of completely sequenced plant genomes. The comparison of fully sequenced genomes allows for identification of new gene family members, as well as comprehensive analysis of gene family evolution. The aldehyde dehydrogenase (ALDH) gene superfamily comprises a group of enzymes involved in the NAD+- or NADP+-dependent conversion of various aldehydes to their corresponding carboxylic acids. ALDH enzymes are involved in processing many aldehydes that serve as biogenic intermediates in a wide range of metabolic pathways. In addition, many of these enzymes function as 'aldehyde scavengers' by removing reactive aldehydes generated during the oxidative degradation of lipid membranes, also known as lipid peroxidation. Plants and animals share many ALDH families, and many genes are highly conserved between these two evolutionarily distinct groups. Conversely, both plants and animals also contain unique ALDH genes and families. Herein we carried out genome-wide identification of ALDH genes in a number of plant species -including Arabidopsis thaliana (thale crest), Chlamydomonas reinhardtii (unicellular algae), Oryza sativa (rice), Physcomitrella patens (moss), Vitis vinifera (grapevine) and Zea mays (maize). These data were then combined with previous analysis of Populus trichocarpa (poplar tree), Selaginella moellindorffii (gemmiferous spikemoss), Sorghum bicolor (sorghum) and Volvox carteri (colonial algae) for a comprehensive evolutionary comparison of the plant ALDH superfamily. As a result, newly identified genes can be more easily analyzed and gene names can be assigned according to current nomenclature guidelines; our goal is to clarify previously confusing and conflicting names and classifications that might confound results and prevent accurate comparisons between studies.
dcterms:title
Aldehyde dehydrogenase (ALDH) superfamily in plants: gene nomenclature and comparative genomics Aldehyde dehydrogenase (ALDH) superfamily in plants: gene nomenclature and comparative genomics
skos:prefLabel
Aldehyde dehydrogenase (ALDH) superfamily in plants: gene nomenclature and comparative genomics Aldehyde dehydrogenase (ALDH) superfamily in plants: gene nomenclature and comparative genomics
skos:notation
RIV/61989592:15310/13:33147795!RIV14-GA0-15310___
n9:predkladatel
n18:orjk%3A15310
n4:aktivita
n16:P
n4:aktivity
P(GAP501/11/1591)
n4:cisloPeriodika
1
n4:dodaniDat
n19:2014
n4:domaciTvurceVysledku
n13:7905785
n4:druhVysledku
n10:J
n4:duvernostUdaju
n8:S
n4:entitaPredkladatele
n14:predkladatel
n4:idSjednocenehoVysledku
60024
n4:idVysledku
RIV/61989592:15310/13:33147795
n4:jazykVysledku
n21:eng
n4:klicovaSlova
ALDH, aldehyde dehydrogenase, stress response, gene family, nomenclature
n4:klicoveSlovo
n5:nomenclature n5:stress%20response n5:gene%20family n5:aldehyde%20dehydrogenase n5:ALDH
n4:kodStatuVydavatele
DE - Spolková republika Německo
n4:kontrolniKodProRIV
[DDDC9757A550]
n4:nazevZdroje
Planta
n4:obor
n12:CE
n4:pocetDomacichTvurcuVysledku
1
n4:pocetTvurcuVysledku
12
n4:projekt
n11:GAP501%2F11%2F1591
n4:rokUplatneniVysledku
n19:2013
n4:svazekPeriodika
237
n4:tvurceVysledku
Brocker, Chad Zhang, Yucheng Nebert, Daniel W. Vasiliou, Vasilis Kirch, Hans-Hubert Carpenter, Sarah Vasiliou, Melpomene Kopečný, David Kotchoni, Simeon O. Wood, Andrew J. Carpenter, Christopher Wang, Xiping
n4:wos
000313030400015
s:issn
0032-0935
s:numberOfPages
22
n17:doi
10.1007/s00425-012-1749-0
n6:organizacniJednotka
15310