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Statements

Subject Item
n2:RIV%2F61389030%3A_____%2F10%3A00350031%21RIV11-MSM-61389030
rdf:type
skos:Concept n16:Vysledek
dcterms:description
In this work, we report on the first thorough characterization of the repeat component of the banana (M. acuminata cv. 'Calcutta 4') genome. Analysis of almost 100 Mb of sequence data (0.15x genome coverage) permitted partial sequence reconstruction and characterization of repetitive DNA, making up about 30% of the genome. The results showed that the banana repeats are predominantly made of various types of Ty1/copia and Ty3/gypsy retroelements representing 16 and 7% of the genome respectively. On the other hand, DNA transposons were found to be rare. In addition to new families of transposable elements, two new satellite repeats were discovered and found useful as cytogenetic markers. To help in banana sequence annotation, a specific Musa repeat database was created, and its utility was demonstrated by analyzing the repeat composition of 62 genomic BAC clones. In this work, we report on the first thorough characterization of the repeat component of the banana (M. acuminata cv. 'Calcutta 4') genome. Analysis of almost 100 Mb of sequence data (0.15x genome coverage) permitted partial sequence reconstruction and characterization of repetitive DNA, making up about 30% of the genome. The results showed that the banana repeats are predominantly made of various types of Ty1/copia and Ty3/gypsy retroelements representing 16 and 7% of the genome respectively. On the other hand, DNA transposons were found to be rare. In addition to new families of transposable elements, two new satellite repeats were discovered and found useful as cytogenetic markers. To help in banana sequence annotation, a specific Musa repeat database was created, and its utility was demonstrated by analyzing the repeat composition of 62 genomic BAC clones.
dcterms:title
Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing
skos:prefLabel
Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing
skos:notation
RIV/61389030:_____/10:00350031!RIV11-MSM-61389030
n3:aktivita
n12:Z n12:P
n3:aktivity
P(IAA600380703), P(KJB500380901), P(LC06004), Z(AV0Z50380511), Z(AV0Z50510513)
n3:cisloPeriodika
204
n3:dodaniDat
n9:2011
n3:domaciTvurceVysledku
n15:3278913 n15:1800477
n3:druhVysledku
n4:J
n3:duvernostUdaju
n8:S
n3:entitaPredkladatele
n17:predkladatel
n3:idSjednocenehoVysledku
284843
n3:idVysledku
RIV/61389030:_____/10:00350031
n3:jazykVysledku
n14:eng
n3:klicovaSlova
IN-SITU HYBRIDIZATION; RIBOSOMAL-RNA GENES; DNA-SEQUENCES
n3:klicoveSlovo
n5:RIBOSOMAL-RNA%20GENES n5:IN-SITU%20HYBRIDIZATION n5:DNA-SEQUENCES
n3:kodStatuVydavatele
GB - Spojené království Velké Británie a Severního Irska
n3:kontrolniKodProRIV
[CC7EDD01DE72]
n3:nazevZdroje
BMC Plant Biology
n3:obor
n11:EB
n3:pocetDomacichTvurcuVysledku
2
n3:pocetTvurcuVysledku
6
n3:projekt
n18:IAA600380703 n18:LC06004 n18:KJB500380901
n3:rokUplatneniVysledku
n9:2010
n3:svazekPeriodika
10
n3:tvurceVysledku
Hřibová, Eva Neumann, Pavel Macas, Jiří Roux, N. Doležel, Jaroslav Matsumoto, T.
n3:wos
000283249100001
n3:zamer
n13:AV0Z50380511 n13:AV0Z50510513
s:issn
1471-2229
s:numberOfPages
10