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Statements

Subject Item
n2:RIV%2F60077344%3A_____%2F13%3A00394950%21RIV14-AV0-60077344
rdf:type
n3:Vysledek skos:Concept
dcterms:description
Rumex acetosa is a dioecious plant with the XY1Y2 sex chromosome system. Both Y chromosomes are heterochromatic and are thought to be degenerated. We performed low-pass 454 sequencing and similarity-based clustering of male and female genomic 454 reads to identify and characterize major groups of R. acetosa repetitive DNA. We found that Copia and Gypsy retrotransposons dominated, followed by DNA transposons and nonlong terminal repeat retrotransposons. CRM and Tat/Ogre retrotransposons dominated the Gypsy superfamily, whereas Maximus/Sireviruses were most abundant among Copia retrotransposons. Only one Gypsy subfamily had accumulated on Y-1 and Y-2 chromosomes, whereas many retrotransposons were ubiquitous on autosomes and the X chromosome, but absent on Y-1 and Y-2 chromosomes, and others were depleted from the X chromosome. One group of CRM Gypsy was specifically localized to centromeres. We also found that majority of previously described satellites (RAYSI, RAYSII, RAYSIII, and RAE180) are accumulated on the Y chromosomes where we identified Y chromosome-specific variant of RAE180. Rumex acetosa is a dioecious plant with the XY1Y2 sex chromosome system. Both Y chromosomes are heterochromatic and are thought to be degenerated. We performed low-pass 454 sequencing and similarity-based clustering of male and female genomic 454 reads to identify and characterize major groups of R. acetosa repetitive DNA. We found that Copia and Gypsy retrotransposons dominated, followed by DNA transposons and nonlong terminal repeat retrotransposons. CRM and Tat/Ogre retrotransposons dominated the Gypsy superfamily, whereas Maximus/Sireviruses were most abundant among Copia retrotransposons. Only one Gypsy subfamily had accumulated on Y-1 and Y-2 chromosomes, whereas many retrotransposons were ubiquitous on autosomes and the X chromosome, but absent on Y-1 and Y-2 chromosomes, and others were depleted from the X chromosome. One group of CRM Gypsy was specifically localized to centromeres. We also found that majority of previously described satellites (RAYSI, RAYSII, RAYSIII, and RAE180) are accumulated on the Y chromosomes where we identified Y chromosome-specific variant of RAE180.
dcterms:title
Contrasting Patterns of Transposable Element and Satellite Distribution on Sex Chromosomes (XY1Y2) in the Dioecious Plant Rumex acetosa Contrasting Patterns of Transposable Element and Satellite Distribution on Sex Chromosomes (XY1Y2) in the Dioecious Plant Rumex acetosa
skos:prefLabel
Contrasting Patterns of Transposable Element and Satellite Distribution on Sex Chromosomes (XY1Y2) in the Dioecious Plant Rumex acetosa Contrasting Patterns of Transposable Element and Satellite Distribution on Sex Chromosomes (XY1Y2) in the Dioecious Plant Rumex acetosa
skos:notation
RIV/60077344:_____/13:00394950!RIV14-AV0-60077344
n3:predkladatel
n4:ico%3A60077344
n5:aktivita
n17:Z n17:P n17:I
n5:aktivity
I, P(ED1.1.00/02.0068), P(EE2.3.20.0045), P(GAP305/10/0930), P(GAP501/10/0102), P(GAP501/12/2220), Z(AV0Z50040702)
n5:cisloPeriodika
4
n5:dodaniDat
n15:2014
n5:domaciTvurceVysledku
n16:8813728 n16:5717817
n5:druhVysledku
n18:J
n5:duvernostUdaju
n13:S
n5:entitaPredkladatele
n14:predkladatel
n5:idSjednocenehoVysledku
66913
n5:idVysledku
RIV/60077344:_____/13:00394950
n5:jazykVysledku
n20:eng
n5:klicovaSlova
Y-CHROMOSOME; REPETITIVE SEQUENCES; SILENE-LATIFOLIA
n5:klicoveSlovo
n11:Y-CHROMOSOME n11:SILENE-LATIFOLIA n11:REPETITIVE%20SEQUENCES
n5:kodStatuVydavatele
GB - Spojené království Velké Británie a Severního Irska
n5:kontrolniKodProRIV
[20E28F2DB04A]
n5:nazevZdroje
Genome Biology and Evolution
n5:obor
n19:EB
n5:pocetDomacichTvurcuVysledku
2
n5:pocetTvurcuVysledku
9
n5:projekt
n9:GAP501%2F10%2F0102 n9:ED1.1.00%2F02.0068 n9:GAP501%2F12%2F2220 n9:GAP305%2F10%2F0930 n9:EE2.3.20.0045
n5:rokUplatneniVysledku
n15:2013
n5:svazekPeriodika
5
n5:tvurceVysledku
Tokan, Viktor Šteflová, Pavlína Hobza, Roman Vogel, Ivan Macas, Jiří Novák, Petr Kejnovský, Eduard Lexa, M. Vyskot, Boris
n5:wos
000318557200013
n5:zamer
n6:AV0Z50040702
s:issn
1759-6653
s:numberOfPages
14
n10:doi
10.1093/gbe/evt049