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Statements

Subject Item
n2:RIV%2F00216224%3A14740%2F14%3A00075598%21RIV15-MSM-14740___
rdf:type
skos:Concept n19:Vysledek
rdfs:seeAlso
http://nar.oxfordjournals.org/content/early/2014/05/21/nar.gku426.full.pdf+html
dcterms:description
Structure validation has become a major issue in the structural biology community, and an essential step is checking the ligand structure. This paper introduces MotiveValidator, a web-based application for the validation of ligands and residues in PDB or PDBx/mmCIF format files provided by the user. Specifically, MotiveValidator is able to evaluate in a straightforward manner whether the ligand or residue being studied has a correct annotation (3-letter code), i.e. if it has the same topology and stereochemistry as the model ligand or residue with this annotation. If not, MotiveValidator explicitly describes the differences. MotiveValidator offers a user-friendly, interactive and platform-independent environment for validating structures obtained by any type of experiment. The results of the validation are presented in both tabular and graphical form, facilitating their interpretation. Structure validation has become a major issue in the structural biology community, and an essential step is checking the ligand structure. This paper introduces MotiveValidator, a web-based application for the validation of ligands and residues in PDB or PDBx/mmCIF format files provided by the user. Specifically, MotiveValidator is able to evaluate in a straightforward manner whether the ligand or residue being studied has a correct annotation (3-letter code), i.e. if it has the same topology and stereochemistry as the model ligand or residue with this annotation. If not, MotiveValidator explicitly describes the differences. MotiveValidator offers a user-friendly, interactive and platform-independent environment for validating structures obtained by any type of experiment. The results of the validation are presented in both tabular and graphical form, facilitating their interpretation.
dcterms:title
MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes
skos:prefLabel
MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes
skos:notation
RIV/00216224:14740/14:00075598!RIV15-MSM-14740___
n3:aktivita
n14:S n14:P
n3:aktivity
P(ED1.1.00/02.0068), P(EE2.3.20.0042), P(EE2.3.30.0009), P(LH13055), S
n3:cisloPeriodika
W1
n3:dodaniDat
n11:2015
n3:domaciTvurceVysledku
n4:5522064 n4:4347374 Jaiswal, Deepti n4:1274740 n4:7793650 n4:9662936 Ionescu, Crina-Maria n4:3876500 n4:2541815
n3:druhVysledku
n18:J
n3:duvernostUdaju
n20:S
n3:entitaPredkladatele
n13:predkladatel
n3:idSjednocenehoVysledku
30645
n3:idVysledku
RIV/00216224:14740/14:00075598
n3:jazykVysledku
n12:eng
n3:klicovaSlova
PROTEIN DATA-BANK; CRYSTAL-STRUCTURES; CRYSTALLOGRAPHY; INFORMATION; REFINEMENT; BIOLOGY; ARCHIVE; SERVER
n3:klicoveSlovo
n6:SERVER n6:INFORMATION n6:CRYSTAL-STRUCTURES n6:PROTEIN%20DATA-BANK n6:CRYSTALLOGRAPHY n6:REFINEMENT n6:ARCHIVE n6:BIOLOGY
n3:kodStatuVydavatele
GB - Spojené království Velké Británie a Severního Irska
n3:kontrolniKodProRIV
[6FE50D55746F]
n3:nazevZdroje
Nucleic Acids Research
n3:obor
n5:CE
n3:pocetDomacichTvurcuVysledku
9
n3:pocetTvurcuVysledku
9
n3:projekt
n7:LH13055 n7:EE2.3.20.0042 n7:ED1.1.00%2F02.0068 n7:EE2.3.30.0009
n3:rokUplatneniVysledku
n11:2014
n3:svazekPeriodika
42
n3:tvurceVysledku
Geidl, Stanislav Svobodová Vařeková, Radka Ionescu, Crina-Maria Horský, Vladimír Sehnal, David Pravda, Lukáš Jaiswal, Deepti Wimmerová, Michaela Koča, Jaroslav
n3:wos
000339715000038
s:issn
0305-1048
s:numberOfPages
7
n15:doi
10.1093/nar/gku426
n16:organizacniJednotka
14740