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Statements

Subject Item
n2:RIV%2F00216224%3A14330%2F14%3A00076022%21RIV15-MSM-14330___
rdf:type
skos:Concept n17:Vysledek
dcterms:description
In this tool paper, we target the problem of unique annotation of organism-specific computational models presented in a public model database. In particular, we present Biochemical Space, a novel annotation methodology accompanied with a set of software tools that allow to create, manage and maintain the Biochemical Space content. The main idea behind is to create a transparent well-annotated reaction network of chemical entities and elemental reactions onto which the mathematical models are projected. For a given organism, the Biochemical Space represents a unifying platform for understanding of the related biological processes. In this tool paper, we target the problem of unique annotation of organism-specific computational models presented in a public model database. In particular, we present Biochemical Space, a novel annotation methodology accompanied with a set of software tools that allow to create, manage and maintain the Biochemical Space content. The main idea behind is to create a transparent well-annotated reaction network of chemical entities and elemental reactions onto which the mathematical models are projected. For a given organism, the Biochemical Space represents a unifying platform for understanding of the related biological processes.
dcterms:title
Biochemical Space: A Framework for Systemic Annotation of Biological Models Biochemical Space: A Framework for Systemic Annotation of Biological Models
skos:prefLabel
Biochemical Space: A Framework for Systemic Annotation of Biological Models Biochemical Space: A Framework for Systemic Annotation of Biological Models
skos:notation
RIV/00216224:14330/14:00076022!RIV15-MSM-14330___
n4:aktivita
n14:S n14:P
n4:aktivity
P(EE2.3.20.0256), S
n4:dodaniDat
n19:2015
n4:domaciTvurceVysledku
n5:8225400 n5:3054209 n5:6306640
n4:druhVysledku
n11:D
n4:duvernostUdaju
n18:S
n4:entitaPredkladatele
n9:predkladatel
n4:idSjednocenehoVysledku
5300
n4:idVysledku
RIV/00216224:14330/14:00076022
n4:jazykVysledku
n10:eng
n4:klicovaSlova
biological models; model annotation; systems biology; cyanobacteria
n4:klicoveSlovo
n12:biological%20models n12:model%20annotation n12:systems%20biology n12:cyanobacteria
n4:kontrolniKodProRIV
[0E838A644335]
n4:mistoKonaniAkce
Berlin
n4:mistoVydani
Amsterdam
n4:nazevZdroje
Proceedings of the 5th International Workshop on Interactions between Computer Science and Biology (CS2Bio’14)
n4:obor
n8:IN
n4:pocetDomacichTvurcuVysledku
3
n4:pocetTvurcuVysledku
6
n4:projekt
n20:EE2.3.20.0256
n4:rokUplatneniVysledku
n19:2014
n4:tvurceVysledku
Šafránek, David Steuer, Ralf Děd, Tadeáš Müller, Stefan Červený, Jan Klement, Matej
n4:typAkce
n16:WRD
n4:zahajeniAkce
2014-01-01+01:00
s:issn
1571-0661
s:numberOfPages
14
n21:doi
10.1016/j.entcs.2014.06.013
n15:hasPublisher
Elsevier
n13:organizacniJednotka
14330