This HTML5 document contains 49 embedded RDF statements represented using HTML+Microdata notation.

The embedded RDF content will be recognized by any processor of HTML5 Microdata.

Namespace Prefixes

PrefixIRI
n20http://linked.opendata.cz/ontology/domain/vavai/riv/typAkce/
dctermshttp://purl.org/dc/terms/
n11http://localhost/temp/predkladatel/
n6http://purl.org/net/nknouf/ns/bibtex#
n18http://linked.opendata.cz/resource/domain/vavai/projekt/
n4http://linked.opendata.cz/resource/domain/vavai/riv/tvurce/
n13http://linked.opendata.cz/ontology/domain/vavai/
shttp://schema.org/
skoshttp://www.w3.org/2004/02/skos/core#
n3http://linked.opendata.cz/ontology/domain/vavai/riv/
n2http://linked.opendata.cz/resource/domain/vavai/vysledek/
rdfhttp://www.w3.org/1999/02/22-rdf-syntax-ns#
n7http://linked.opendata.cz/ontology/domain/vavai/riv/klicoveSlovo/
n10http://linked.opendata.cz/ontology/domain/vavai/riv/duvernostUdaju/
xsdhhttp://www.w3.org/2001/XMLSchema#
n16http://linked.opendata.cz/ontology/domain/vavai/riv/jazykVysledku/
n5http://linked.opendata.cz/ontology/domain/vavai/riv/aktivita/
n17http://linked.opendata.cz/ontology/domain/vavai/riv/obor/
n19http://linked.opendata.cz/ontology/domain/vavai/riv/druhVysledku/
n15http://linked.opendata.cz/resource/domain/vavai/vysledek/RIV%2F00216224%3A14310%2F05%3A00013831%21RIV06-MSM-14310___/
n12http://reference.data.gov.uk/id/gregorian-year/

Statements

Subject Item
n2:RIV%2F00216224%3A14310%2F05%3A00013831%21RIV06-MSM-14310___
rdf:type
n13:Vysledek skos:Concept
dcterms:description
Kink-turn (K-turn) motifs are asymmetric internal loops found at conserved positions in diverse RNAs, with sharp bends in phosphodiester backbones producing %22V%22-shaped structures. Explicit-solvent Molecular Dynamics (MD) simulations were carried out for selected K-turns from 23S rRNA (Kt-38, Kt-42, Kt-58) and for K-turn of human U4 snRNA (Kt-U4). The MD simulations reveal hinge-like K-turn motions on the nanosecond time-scale and thus indicate that K-turns are dynamically flexible, and capable of regulating significant inter-segmental motions. The first conserved A-minor interaction between the K-turn stems is entirely stable in all simulations. The angle between the helical arms of Kt-38 and Kt-42 is regulated by local variations of the second A-minor (type I) interaction between the stems. Its variability ranges from closed geometries to open ones stabilized by insertion of long-residency waters between adenine and cytosine. Kt-58 and Kt-U4 exhibit similar elbow-like motions caused by conformationa Kink-turn (K-turn) motifs are asymmetric internal loops found at conserved positions in diverse RNAs, with sharp bends in phosphodiester backbones producing %22V%22-shaped structures. Explicit-solvent Molecular Dynamics (MD) simulations were carried out for selected K-turns from 23S rRNA (Kt-38, Kt-42, Kt-58) and for K-turn of human U4 snRNA (Kt-U4). The MD simulations reveal hinge-like K-turn motions on the nanosecond time-scale and thus indicate that K-turns are dynamically flexible, and capable of regulating significant inter-segmental motions. The first conserved A-minor interaction between the K-turn stems is entirely stable in all simulations. The angle between the helical arms of Kt-38 and Kt-42 is regulated by local variations of the second A-minor (type I) interaction between the stems. Its variability ranges from closed geometries to open ones stabilized by insertion of long-residency waters between adenine and cytosine. Kt-58 and Kt-U4 exhibit similar elbow-like motions caused by conformationa Kink-turn (K-turn) motifs are asymmetric internal loops found at conserved positions in diverse RNAs, with sharp bends in phosphodiester backbones producing %22V%22-shaped structures. Explicit-solvent Molecular Dynamics (MD) simulations were carried out for selected K-turns from 23S rRNA (Kt-38, Kt-42, Kt-58) and for K-turn of human U4 snRNA (Kt-U4). The MD simulations reveal hinge-like K-turn motions on the nanosecond time-scale and thus indicate that K-turns are dynamically flexible, and capable of regulating significant inter-segmental motions. The first conserved A-minor interaction between the K-turn stems is entirely stable in all simulations. The angle between the helical arms of Kt-38 and Kt-42 is regulated by local variations of the second A-minor (type I) interaction between the stems. Its variability ranges from closed geometries to open ones stabilized by insertion of long-residency waters between adenine and cytosine. Kt-58 and Kt-U4 exhibit similar elbow-like motions caused by conformationa
dcterms:title
Elbow-like motions in Ribosomal Kink-turns: The role of the second A-minor motif and Nominally unpaired bases Klbove pohyby Ribosomalnych Kink turnov: Uloha druhej A-minor interakcie a nesparenych nukleotidov Elbow-like motions in Ribosomal Kink-turns: The role of the second A-minor motif and Nominally unpaired bases
skos:prefLabel
Elbow-like motions in Ribosomal Kink-turns: The role of the second A-minor motif and Nominally unpaired bases Klbove pohyby Ribosomalnych Kink turnov: Uloha druhej A-minor interakcie a nesparenych nukleotidov Elbow-like motions in Ribosomal Kink-turns: The role of the second A-minor motif and Nominally unpaired bases
skos:notation
RIV/00216224:14310/05:00013831!RIV06-MSM-14310___
n3:strany
800-801
n3:aktivita
n5:P
n3:aktivity
P(LN00A016)
n3:dodaniDat
n12:2006
n3:domaciTvurceVysledku
n4:4347374 n4:3223779 n4:4585623
n3:druhVysledku
n19:D
n3:duvernostUdaju
n10:S
n3:entitaPredkladatele
n15:predkladatel
n3:idSjednocenehoVysledku
519858
n3:idVysledku
RIV/00216224:14310/05:00013831
n3:jazykVysledku
n16:eng
n3:klicovaSlova
Kink-turn; RNA flexibility; A-minor; Ribosome dynamics
n3:klicoveSlovo
n7:Kink-turn n7:RNA%20flexibility n7:A-minor n7:Ribosome%20dynamics
n3:kontrolniKodProRIV
[B29AC9864289]
n3:mistoKonaniAkce
Albany, NY, USA
n3:mistoVydani
New York, USA
n3:nazevZdroje
Journal Of Biomolecular Structure and Dynamics
n3:obor
n17:CF
n3:pocetDomacichTvurcuVysledku
3
n3:pocetTvurcuVysledku
4
n3:projekt
n18:LN00A016
n3:rokUplatneniVysledku
n12:2005
n3:tvurceVysledku
Rázga, Filip Koča, Jaroslav Šponer, Jiří Leontis, Neocles B.
n3:typAkce
n20:WRD
n3:zahajeniAkce
2005-01-01+01:00
s:issn
1533-0346
s:numberOfPages
2
n6:hasPublisher
Adenine Press
n11:organizacniJednotka
14310