This HTML5 document contains 51 embedded RDF statements represented using HTML+Microdata notation.

The embedded RDF content will be recognized by any processor of HTML5 Microdata.

Namespace Prefixes

PrefixIRI
dctermshttp://purl.org/dc/terms/
n12http://localhost/temp/predkladatel/
n17http://linked.opendata.cz/resource/domain/vavai/riv/tvurce/
n6http://linked.opendata.cz/ontology/domain/vavai/
n14http://linked.opendata.cz/resource/domain/vavai/zamer/
shttp://schema.org/
skoshttp://www.w3.org/2004/02/skos/core#
n3http://linked.opendata.cz/ontology/domain/vavai/riv/
n19http://bibframe.org/vocab/
n15http://linked.opendata.cz/resource/domain/vavai/vysledek/RIV%2F00216208%3A11310%2F14%3A10192914%21RIV15-MSM-11310___/
n2http://linked.opendata.cz/resource/domain/vavai/vysledek/
rdfhttp://www.w3.org/1999/02/22-rdf-syntax-ns#
n8http://linked.opendata.cz/ontology/domain/vavai/riv/klicoveSlovo/
n10http://linked.opendata.cz/ontology/domain/vavai/riv/duvernostUdaju/
xsdhhttp://www.w3.org/2001/XMLSchema#
n16http://linked.opendata.cz/ontology/domain/vavai/riv/jazykVysledku/
n4http://linked.opendata.cz/ontology/domain/vavai/riv/aktivita/
n18http://linked.opendata.cz/ontology/domain/vavai/riv/obor/
n11http://linked.opendata.cz/ontology/domain/vavai/riv/druhVysledku/
n9http://reference.data.gov.uk/id/gregorian-year/

Statements

Subject Item
n2:RIV%2F00216208%3A11310%2F14%3A10192914%21RIV15-MSM-11310___
rdf:type
n6:Vysledek skos:Concept
dcterms:description
Frequently discussed analogy between genetic and human texts is explored by comparison of alternation of polar and non-polar amino-acid residues in proteins and alternation of consonants and vowels in human texts. In human languages, the usage of possible combinations of consonants and vowels is influenced by pronounceability of the combinations. Similarly, oligopeptide composition of proteins is influenced by requirements of protein folding and stability. One special type of structure often present in proteins is amphipathic alpha-helices in which polar and non-polar amino acids alternate with the period 3.5 residues, not unlike alternation of consonants and vowels. In this study, we evaluated the contribution made by amphipathic alternations to the protein sequence texts (20-24%). Their proportion is lower than respective values for alternating words in human texts (57-89%). The proteomes (full sets of proteins for selected organisms) were transformed into ranked sequences of n-grams (words of length n), including periodical amphipathic structures. Similarly, human texts were transformed into sequences of alternating consonants and vowels. Analysis of the vocabularies shows that in both types of texts (human languages and proteins) the alternating words are dominant or highly preferred, thus, strengthening the analogy between these two types of texts. The contribution of amphipathic words in the upper parts of the ranked lists for 10 analyzed proteomes varies between 58 and 74%. In human texts respective values range between 90 and 100%. Frequently discussed analogy between genetic and human texts is explored by comparison of alternation of polar and non-polar amino-acid residues in proteins and alternation of consonants and vowels in human texts. In human languages, the usage of possible combinations of consonants and vowels is influenced by pronounceability of the combinations. Similarly, oligopeptide composition of proteins is influenced by requirements of protein folding and stability. One special type of structure often present in proteins is amphipathic alpha-helices in which polar and non-polar amino acids alternate with the period 3.5 residues, not unlike alternation of consonants and vowels. In this study, we evaluated the contribution made by amphipathic alternations to the protein sequence texts (20-24%). Their proportion is lower than respective values for alternating words in human texts (57-89%). The proteomes (full sets of proteins for selected organisms) were transformed into ranked sequences of n-grams (words of length n), including periodical amphipathic structures. Similarly, human texts were transformed into sequences of alternating consonants and vowels. Analysis of the vocabularies shows that in both types of texts (human languages and proteins) the alternating words are dominant or highly preferred, thus, strengthening the analogy between these two types of texts. The contribution of amphipathic words in the upper parts of the ranked lists for 10 analyzed proteomes varies between 58 and 74%. In human texts respective values range between 90 and 100%.
dcterms:title
One common structural feature of %22words%22 in protein sequences and human texts One common structural feature of %22words%22 in protein sequences and human texts
skos:prefLabel
One common structural feature of %22words%22 in protein sequences and human texts One common structural feature of %22words%22 in protein sequences and human texts
skos:notation
RIV/00216208:11310/14:10192914!RIV15-MSM-11310___
n3:aktivita
n4:Z n4:I n4:S
n3:aktivity
I, S, Z(MSM0021620828)
n3:cisloPeriodika
7
n3:dodaniDat
n9:2015
n3:domaciTvurceVysledku
n17:5388627
n3:druhVysledku
n11:J
n3:duvernostUdaju
n10:S
n3:entitaPredkladatele
n15:predkladatel
n3:idSjednocenehoVysledku
34561
n3:idVysledku
RIV/00216208:11310/14:10192914
n3:jazykVysledku
n16:eng
n3:klicovaSlova
Dynamics; Structure; Biomolecular; Journal; texts; human; sequences; protein; %22words%22; feature; common structural
n3:klicoveSlovo
n8:sequences n8:texts n8:Dynamics n8:%2522words%2522 n8:protein n8:Biomolecular n8:Journal n8:feature n8:human n8:Structure n8:common%20structural
n3:kodStatuVydavatele
DE - Spolková republika Německo
n3:kontrolniKodProRIV
[855442A25120]
n3:nazevZdroje
Journal of Biomolecular Structure and Dynamics
n3:obor
n18:EB
n3:pocetDomacichTvurcuVysledku
1
n3:pocetTvurcuVysledku
3
n3:rokUplatneniVysledku
n9:2014
n3:svazekPeriodika
32
n3:tvurceVysledku
Trifonov, E. N. Zahradník, D. Zemková, Michaela
n3:wos
000335117100006
n3:zamer
n14:MSM0021620828
s:issn
0739-1102
s:numberOfPages
7
n19:doi
10.1080/07391102.2013.809317
n12:organizacniJednotka
11310