About: The Rhodobacter capsulatus genome

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About: The Rhodobacter capsulatus genome Goto Sponge NotDistinct Permalink

An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	Byla stanovena úplná nukleotidová sekvence genomu bakterie Rhodobacter capsulatus. Genom obsahuje cirkularní chromozom 3,5 Mb a cirkularní plazmid 134 kb. Celková sekvence byla stanovena kráčením po uspořádaných kosmidových klonech. Anotace výsledné sekvence včetně sestavení buněčného metabolizmu bylo provedeno pomocí systému ERGO. V genomu bylo nalezeno 3709 potenciálních genů, z toho k 2392 genům (65 procent) bylo možno nalézt funkční přiřazení. Neobvyklým rysem genomové sekvence je početné zastoupení cizorodých, především fágových úseků. (cs) The genome of Rhodobacter capsulatus has been completely sequenced. It consists of a single chromosome containing 3.5 Mb and a circular plasmid of 134 kb. This effort, started in 1992, began with a fine-structure restriction map of an overlapping set of cosmids that covered the genome. Cosmid sequencing led to a gapped genome that was filled by primer walking on the chromosome and by using lambda clones. Methods had to be developed to handle strong stops in the high GC (68%) inserts. Annotation was done with the ERGO system at Integrated Genomics, as was the reconstruction of the cell's metabolism. It was possible to recognize 3709 orfs of which functional assignments could be made with high confidence to 2392 (65%). Unusual features include the presence of numerous cryptic phage genomes embedded in the chromosome. The genome of Rhodobacter capsulatus has been completely sequenced. It consists of a single chromosome containing 3.5 Mb and a circular plasmid of 134 kb. This effort, started in 1992, began with a fine-structure restriction map of an overlapping set of cosmids that covered the genome. Cosmid sequencing led to a gapped genome that was filled by primer walking on the chromosome and by using lambda clones. Methods had to be developed to handle strong stops in the high GC (68%) inserts. Annotation was done with the ERGO system at Integrated Genomics, as was the reconstruction of the cell's metabolism. It was possible to recognize 3709 orfs of which functional assignments could be made with high confidence to 2392 (65%). Unusual features include the presence of numerous cryptic phage genomes embedded in the chromosome. (en)
Title	Genom Rhodobacter capsulatus (cs) The Rhodobacter capsulatus genome The Rhodobacter capsulatus genome (en)
skos:prefLabel	Genom Rhodobacter capsulatus (cs) The Rhodobacter capsulatus genome The Rhodobacter capsulatus genome (en)
skos:notation	RIV/68378050:_____/01:00021977!RIV07-AV0-68378050
http://linked.open.../vavai/riv/strany	43;52
http://linked.open...avai/riv/aktivita	Z
http://linked.open...avai/riv/aktivity	Z(AV0Z5052915)
http://linked.open...iv/cisloPeriodika	1
http://linked.open...vai/riv/dodaniDat	2007
http://linked.open...aciTvurceVysledku	Pačes, Václav Pačes, Jan Vlček, Čestmír Pečenková, Tamara
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Ústav molekulární genetiky AV ČR, v. v. i.
http://linked.open...dnocenehoVysledku	694754
http://linked.open...ai/riv/idVysledku	RIV/68378050:_____/01:00021977
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	genome; expression; gene (en)
http://linked.open.../riv/klicoveSlovo	expression gene genome
http://linked.open...odStatuVydavatele	NL - Nizozemsko
http://linked.open...ontrolniKodProRIV	[9AAD01EA7626]
http://linked.open...i/riv/nazevZdroje	Photosynthesis Research
http://linked.open...in/vavai/riv/obor	EB
http://linked.open...ichTvurcuVysledku	4 (xsd:int)
http://linked.open...cetTvurcuVysledku	21 (xsd:int)
http://linked.open...UplatneniVysledku	2001
http://linked.open...v/svazekPeriodika	70
http://linked.open...iv/tvurceVysledku	Ivanova, N. Pačes, Jan Pačes, Václav Vlček, Čestmír Ulbrich, P. Pečenková, Tamara Mazur, M. Haselkorn, R. Lapidus, A. Fonstein, M. Cox, R. Kapatral, V. Kogan, Y. Kyrpides, N. Los, T. Lykidis, A. Mikhailova, N. Milgram, A. Rebrekov, D. Reznik, G. Vasieva, O.
http://linked.open...n/vavai/riv/zamer	Regulace a signální cesty uplatňující se v genové expresi, imunitě, onkogenezi, replikaci virů, tvorbě buněčných struktur, chování buněk, vývoji a oplození
issn	0166-8595
number of pages	10 (xsd:int)

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