About: Performance of phased rotation, conformation and translation function: accurate protein model building with tripeptidic and terapeptidic fragments

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About: Performance of phased rotation, conformation and translation function: accurate protein model building with tripeptidic and terapeptidic fragments Goto Sponge NotDistinct Permalink

An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	The automatic building of protein structures with tripeptidic and tetrapeptidic fragments was investigated. The oligopeptidic conformers were positioned in the electron-density map by a phased rotation, conformation and translation function and refined by a real-space refinement. The number of successfully located fragments lies within the interval 75 ? 95 % depending on the resolution and phase quality. The overlaps of partially located fragments were analyzed. The correctly positioned fragments were connected into chains. Chains formed in this way are extended directly into the electron density and a sequence was assigned. In the initial stage of the model building the number of located fragments was between 60 ? 95 % but this number could be increased by several cycles of reciprocal-space refinement and automatic model re-building. A nearly complete structure can be obtained on the condition that the resolution is reasonable. Computer graphics will only needed for a final check and small correction The automatic building of protein structures with tripeptidic and tetrapeptidic fragments was investigated. The oligopeptidic conformers were positioned in the electron-density map by a phased rotation, conformation and translation function and refined by a real-space refinement. The number of successfully located fragments lies within the interval 75 ? 95 % depending on the resolution and phase quality. The overlaps of partially located fragments were analyzed. The correctly positioned fragments were connected into chains. Chains formed in this way are extended directly into the electron density and a sequence was assigned. In the initial stage of the model building the number of located fragments was between 60 ? 95 % but this number could be increased by several cycles of reciprocal-space refinement and automatic model re-building. A nearly complete structure can be obtained on the condition that the resolution is reasonable. Computer graphics will only needed for a final check and small correction (en)
Title	Performance of phased rotation, conformation and translation function: accurate protein model building with tripeptidic and terapeptidic fragments Performance of phased rotation, conformation and translation function: accurate protein model building with tripeptidic and terapeptidic fragments (en)
skos:prefLabel	Performance of phased rotation, conformation and translation function: accurate protein model building with tripeptidic and terapeptidic fragments Performance of phased rotation, conformation and translation function: accurate protein model building with tripeptidic and terapeptidic fragments (en)
skos:notation	RIV/62157124:16370/10:00002651!RIV11-MSM-16370___
http://linked.open...avai/riv/aktivita	Z
http://linked.open...avai/riv/aktivity	Z(MSM6215712403)
http://linked.open...iv/cisloPeriodika	9
http://linked.open...vai/riv/dodaniDat	2011
http://linked.open...aciTvurceVysledku	Václavík, Jiří Pavelčík, František
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Veterinární a farmaceutická univerzita Brno / Farmaceutická fakulta
http://linked.open...dnocenehoVysledku	278492
http://linked.open...ai/riv/idVysledku	RIV/62157124:16370/10:00002651
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	Fragment; rotation function; translation function; conformation; protein model building; automatic structure (en)
http://linked.open.../riv/klicoveSlovo	Fragment conformation automatic structure protein model building rotation function translation function
http://linked.open...odStatuVydavatele	GB - Spojené království Velké Británie a Severního Irska
http://linked.open...ontrolniKodProRIV	[CE44D6C2740A]
http://linked.open...i/riv/nazevZdroje	Acta Crystallographica Section D
http://linked.open...in/vavai/riv/obor	FR
http://linked.open...ichTvurcuVysledku	2 (xsd:int)
http://linked.open...cetTvurcuVysledku	2 (xsd:int)
http://linked.open...UplatneniVysledku	2010
http://linked.open...v/svazekPeriodika	66
http://linked.open...iv/tvurceVysledku	Václavík, Jiří Pavelčík, František
http://linked.open...ain/vavai/riv/wos	000281635500007
http://linked.open...n/vavai/riv/zamer	Active creation of health, yield and performance of the large animals
issn	0907-4449
number of pages	12 (xsd:int)
http://localhost/t...ganizacniJednotka	16370
is http://linked.open...avai/riv/vysledek of	Performance of phased rotation, conformation and translation function: accurate protein model building with tripeptidic and terapeptidic fragments Performance of phased rotation, conformation and translation function: accurate protein model building with tripeptidic and terapeptidic fragments Performance of phased rotation, conformation and translation function: accurate protein model building with tripeptidic and terapeptidic fragments

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