About: Real-time Visualization and Exploration of Protein Empty Space with Varying Parameters

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	Long-term research in the area of protein analysis proved the importance of an empty space situated inside these macromolecular structures. This empty space influences the protein function, characteristics or reactivity. Many algorithms enabling computation of these empty spaces (or voids) have been published and their results were evaluated by protein engineers to confirm their chemical relevance. However, not all detected voids inside protein are of the same importance. Thus, the examination and assessment of all voids must follow to reveal the important ones. In this phase the visual representation of voids is very valuable and substantially decreases the time spent in this evaluation phase. In this paper we present an extension of the algorithm for the visualization and further evaluation of protein voids in real-time. The user-driven approach enables to compute and display empty space that satisfies the input parameters instantly. Long-term research in the area of protein analysis proved the importance of an empty space situated inside these macromolecular structures. This empty space influences the protein function, characteristics or reactivity. Many algorithms enabling computation of these empty spaces (or voids) have been published and their results were evaluated by protein engineers to confirm their chemical relevance. However, not all detected voids inside protein are of the same importance. Thus, the examination and assessment of all voids must follow to reveal the important ones. In this phase the visual representation of voids is very valuable and substantially decreases the time spent in this evaluation phase. In this paper we present an extension of the algorithm for the visualization and further evaluation of protein voids in real-time. The user-driven approach enables to compute and display empty space that satisfies the input parameters instantly. (en)
Title	Real-time Visualization and Exploration of Protein Empty Space with Varying Parameters Real-time Visualization and Exploration of Protein Empty Space with Varying Parameters (en)
skos:prefLabel	Real-time Visualization and Exploration of Protein Empty Space with Varying Parameters Real-time Visualization and Exploration of Protein Empty Space with Varying Parameters (en)
skos:notation	RIV/00216224:14330/13:00066457!RIV14-MSM-14330___
http://linked.open...avai/predkladatel	Fakulta informatiky
http://linked.open...avai/riv/aktivita	P
http://linked.open...avai/riv/aktivity	P(GAP202/10/1435), P(LG13010)
http://linked.open...iv/cisloPeriodika	vol. 5, no. 3 & 4
http://linked.open...vai/riv/dodaniDat	2014
http://linked.open...aciTvurceVysledku	Šustr, Vilém Kozlíková, Barbora Strnad, Ondřej Sochor, Jiří
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Masarykova univerzita / Fakulta informatiky
http://linked.open...dnocenehoVysledku	101653
http://linked.open...ai/riv/idVysledku	RIV/00216224:14330/13:00066457
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	protein; empty space; void; visualization; real-time; cavity; volume; Voronoi diagram; Delaunay triangulation (en)
http://linked.open.../riv/klicoveSlovo	Voronoi diagram Delaunay triangulation cavity protein visualization volume empty space real-time void
http://linked.open...odStatuVydavatele	NL - Nizozemsko
http://linked.open...ontrolniKodProRIV	[3D9BFE14EF78]
http://linked.open...i/riv/nazevZdroje	International Journal on Advances in Life Sciences
http://linked.open...in/vavai/riv/obor	IN
http://linked.open...ichTvurcuVysledku	4 (xsd:int)
http://linked.open...cetTvurcuVysledku	4 (xsd:int)
http://linked.open...vavai/riv/projekt	Czech Republic representation in the European Research Consortium for Informatics and Mathematics (ERCIM) Analysis and Visualization of Protein Structures
http://linked.open...UplatneniVysledku	2013
http://linked.open...v/svazekPeriodika	year 2013
http://linked.open...iv/tvurceVysledku	Kozlíková, Barbora Sochor, Jiří Strnad, Ondřej Šustr, Vilém
issn	1942-2660
number of pages	11 (xsd:int)
http://localhost/t...ganizacniJednotka	14330

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