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Description
  • We report the latest details on improvements made or planned for the VPCR simulation software currently accessible on the Internet. We describe the inner workings of the dynamic amplification simulation model, concentrating mostly on the time- and sensitivity-critical step of sequence matching. Replacement of BLAST by the more sensitive and faster PRMEX similarity search program resulted in a marked improvement of PCR product predictions. Further speed improvements were acheived using hardware acceleration of approximate sequence matching.
  • We report the latest details on improvements made or planned for the VPCR simulation software currently accessible on the Internet. We describe the inner workings of the dynamic amplification simulation model, concentrating mostly on the time- and sensitivity-critical step of sequence matching. Replacement of BLAST by the more sensitive and faster PRMEX similarity search program resulted in a marked improvement of PCR product predictions. Further speed improvements were acheived using hardware acceleration of approximate sequence matching. (en)
Title
  • Genomic PCR simulation with hardware-accelerated approximate sequence matching
  • Genomic PCR simulation with hardware-accelerated approximate sequence matching (en)
skos:prefLabel
  • Genomic PCR simulation with hardware-accelerated approximate sequence matching
  • Genomic PCR simulation with hardware-accelerated approximate sequence matching (en)
skos:notation
  • RIV/00216224:14330/07:00041408!RIV11-MSM-14330___
http://linked.open...avai/riv/aktivita
http://linked.open...avai/riv/aktivity
  • Z(MSM0021622419), Z(MSM0021630528)
http://linked.open...vai/riv/dodaniDat
http://linked.open...aciTvurceVysledku
http://linked.open.../riv/druhVysledku
http://linked.open...iv/duvernostUdaju
http://linked.open...titaPredkladatele
http://linked.open...dnocenehoVysledku
  • 423206
http://linked.open...ai/riv/idVysledku
  • RIV/00216224:14330/07:00041408
http://linked.open...riv/jazykVysledku
http://linked.open.../riv/klicovaSlova
  • Virtual PCR; FPGA; sequence alignment; mathematical model (en)
http://linked.open.../riv/klicoveSlovo
http://linked.open...ontrolniKodProRIV
  • [7F09E3917FB2]
http://linked.open...v/mistoKonaniAkce
  • Praha
http://linked.open...i/riv/mistoVydani
  • Praha
http://linked.open...i/riv/nazevZdroje
  • Proceedings 21st European Conference on Modelling and Simulation
http://linked.open...in/vavai/riv/obor
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http://linked.open...cetTvurcuVysledku
http://linked.open...UplatneniVysledku
http://linked.open...iv/tvurceVysledku
  • Fučík, Otto
  • Lexa, Matej
  • Martínek, Tomáš
  • Beck, Patrik
  • Valle, Giorgio
  • Zara, Ivano
http://linked.open...vavai/riv/typAkce
http://linked.open.../riv/zahajeniAkce
http://linked.open...n/vavai/riv/zamer
number of pages
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  • ECMS
https://schema.org/isbn
  • 978-0-9553018-2-7
http://localhost/t...ganizacniJednotka
  • 14330
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