About: jSIPRO - Analysis tool for magnetic resonance spectroscopic imaging

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An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

Attributes	Values
rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
rdfs:seeAlso	http://ac.els-cdn.com/S0169260713002174/1-s2.0-S0169260713002174-main.pdf?_tid=9fa3c7e6-73ba-11e3-8bca-00000aab0f6b&acdnat=1388673293_e0af3afb52adc1bc6acf85a91570d2d3
Description	Magnetic resonance spectroscopic imaging (MRSI) involves a huge number of spectra to be processed and analyzed. Several tools enabling MRSI data processing have been developed and widely used. However, the processing programs primarily focus on sophisticated spectra processing and offer limited support for the analysis of the calculated spectroscopic maps. In this paper the jSIPRO (java Spectroscopic Imaging PROcessing) program is presented, which is a java-based graphical interface enabling post-processing, viewing, analysis and result reporting of MRSI data. Interactive graphical processing as well as protocol controlled batch processing are available in jSIPRO. jSIPRO does not contain a built-in fitting program. Instead, it makes use of fitting programs from third parties and manages the data flows. Currently, automatic spectra processing using LCModel, TARQUIN and jMRUI programs are supported. Concentration and error values, fitted spectra, metabolite images and various parametric maps can be viewed for each calculated dataset. Metabolite images can be exported in the DICOM format either for archiving purposes or for the use in neurosurgery navigation systems. Magnetic resonance spectroscopic imaging (MRSI) involves a huge number of spectra to be processed and analyzed. Several tools enabling MRSI data processing have been developed and widely used. However, the processing programs primarily focus on sophisticated spectra processing and offer limited support for the analysis of the calculated spectroscopic maps. In this paper the jSIPRO (java Spectroscopic Imaging PROcessing) program is presented, which is a java-based graphical interface enabling post-processing, viewing, analysis and result reporting of MRSI data. Interactive graphical processing as well as protocol controlled batch processing are available in jSIPRO. jSIPRO does not contain a built-in fitting program. Instead, it makes use of fitting programs from third parties and manages the data flows. Currently, automatic spectra processing using LCModel, TARQUIN and jMRUI programs are supported. Concentration and error values, fitted spectra, metabolite images and various parametric maps can be viewed for each calculated dataset. Metabolite images can be exported in the DICOM format either for archiving purposes or for the use in neurosurgery navigation systems. (en)
Title	jSIPRO - Analysis tool for magnetic resonance spectroscopic imaging jSIPRO - Analysis tool for magnetic resonance spectroscopic imaging (en)
skos:prefLabel	jSIPRO - Analysis tool for magnetic resonance spectroscopic imaging jSIPRO - Analysis tool for magnetic resonance spectroscopic imaging (en)
skos:notation	RIV/00023001:_____/13:00058731!RIV14-MZ0-00023001
http://linked.open...avai/predkladatel	Institut klinické a experimentální mediciny
http://linked.open...avai/riv/aktivita	I P
http://linked.open...avai/riv/aktivity	I, P(1M0517), P(LC554), P(NT13017)
http://linked.open...iv/cisloPeriodika	1
http://linked.open...vai/riv/dodaniDat	2014
http://linked.open...aciTvurceVysledku	Hájek, Milan Dezortová, Monika Wagnerová, Dita Škoch, Antonín Jírů, Filip
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Institut klinické a experimentální medicíny
http://linked.open...dnocenehoVysledku	81994
http://linked.open...ai/riv/idVysledku	RIV/00023001:_____/13:00058731
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	DICOM export; jMRUI; TARQUIN; LCModel; Metabolite images; Spectra processing; Spectroscopic imaging (en)
http://linked.open.../riv/klicoveSlovo	DICOM export LCModel Metabolite images Spectra processing Spectroscopic imaging TARQUIN jMRUI
http://linked.open...odStatuVydavatele	IE - Irsko
http://linked.open...ontrolniKodProRIV	[458D328137E0]
http://linked.open...i/riv/nazevZdroje	Computer methods and programs in biomedicine
http://linked.open...in/vavai/riv/obor	FP
http://linked.open...ichTvurcuVysledku	5 (xsd:int)
http://linked.open...cetTvurcuVysledku	5 (xsd:int)
http://linked.open...vavai/riv/projekt	1H MR Spectroscopy at 1.5T and 3T in Diagnostics of Prostate Carcinoma Center of Neuropsychiatric Studies 2005-2009 (Neurobiology in Clinical Application) Neuroscience Centre
http://linked.open...UplatneniVysledku	2013
http://linked.open...v/svazekPeriodika	112
http://linked.open...iv/tvurceVysledku	Hájek, Milan Dezortová, Monika Wagnerová, Dita Škoch, Antonín Jírů, Filip
http://linked.open...ain/vavai/riv/wos	000324250400015
issn	0169-2607
number of pages	16 (xsd:int)
http://bibframe.org/vocab/doi	10.1016/j.cmpb.2013.06.018

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