About: Structural and evolutionary classification of G/U wobble basepairs in the ribosome

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About: Structural and evolutionary classification of G/U wobble basepairs in the ribosome Goto Sponge NotDistinct Permalink

An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	Prezentujeme komplexní strukturu, evoluční a molekulově dynamickou (MD) studii G/U wooble párů bází v ribozómu. Tyto páry bází jsou klasifikované podle jejich terciárních interakcí. Sekvenční konzervace na jejich pozicích je určená. Specifická interakce objevující se v úzkém žlábku G/U páru - těsná interakce (P-interakce) a fosfát backbone interakce (fosfát v kapse interakce) vedou ke zvýšené G/U konzervaci v porovnání s ostatními. (cs) We present a comprehensive structural, evolutionary and molecular dynamics (MD) study of G/U wobble pairs in the ribosome. These basepairs are classified according to their tertiary interactions and sequence conservation at their positions is determined. Specific interaction occurring in the G/U shallow groove pocket - like packing interaction (P-interaction) and some phosphate backbone interactions (phosphate-in-pockets interactions) lead to higher G/U conservation than others. We present a comprehensive structural, evolutionary and molecular dynamics (MD) study of G/U wobble pairs in the ribosome. These basepairs are classified according to their tertiary interactions and sequence conservation at their positions is determined. Specific interaction occurring in the G/U shallow groove pocket - like packing interaction (P-interaction) and some phosphate backbone interactions (phosphate-in-pockets interactions) lead to higher G/U conservation than others. (en)
Title	Structural and evolutionary classification of G/U wobble basepairs in the ribosome Štrukturní a evoluční klasifikace G/U wobble párů bází v ribozómu (cs) Structural and evolutionary classification of G/U wobble basepairs in the ribosome (en)
skos:prefLabel	Structural and evolutionary classification of G/U wobble basepairs in the ribosome Štrukturní a evoluční klasifikace G/U wobble párů bází v ribozómu (cs) Structural and evolutionary classification of G/U wobble basepairs in the ribosome (en)
skos:notation	RIV/68081707:_____/06:00039009!RIV07-AV0-68081707
http://linked.open.../vavai/riv/strany	1326;1341
http://linked.open...avai/riv/aktivita	P Z
http://linked.open...avai/riv/aktivity	P(GA203/05/0009), P(GA203/05/0388), Z(AV0Z50040507)
http://linked.open...iv/cisloPeriodika	5
http://linked.open...vai/riv/dodaniDat	2007
http://linked.open...aciTvurceVysledku	Šponer, Jiří
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Biofyzikální ústav AV ČR, v. v. i.
http://linked.open...dnocenehoVysledku	501906
http://linked.open...ai/riv/idVysledku	RIV/68081707:_____/06:00039009
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	G/U wobble pairs; molecular dynamics; P-interaction (en)
http://linked.open.../riv/klicoveSlovo	molecular dynamics G/U wobble pairs P-interaction
http://linked.open...odStatuVydavatele	GB - Spojené království Velké Británie a Severního Irska
http://linked.open...ontrolniKodProRIV	[424EBFD28568]
http://linked.open...i/riv/nazevZdroje	Nucleic Acids Research
http://linked.open...in/vavai/riv/obor	BO
http://linked.open...ichTvurcuVysledku	1 (xsd:int)
http://linked.open...cetTvurcuVysledku	4 (xsd:int)
http://linked.open...vavai/riv/projekt	Structure and dynamics of DNA nitrogeneous bases, base pairs, oligonucleotides and their complexes with water, ions and drugs Conformational dynamics of nucleic acids
http://linked.open...UplatneniVysledku	2006
http://linked.open...v/svazekPeriodika	34
http://linked.open...iv/tvurceVysledku	Šponer, Jiří Leontis, N. B. Mokdad, A. Krasovska, M. V.
http://linked.open...n/vavai/riv/zamer	Biophysics of dynamic structures and functions of biological systems
issn	0305-1048
number of pages	16 (xsd:int)

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