About: Automated counting of yeast colonies using the Fast Radial Transform algorithm

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About: Automated counting of yeast colonies using the Fast Radial Transform algorithm Goto Sponge NotDistinct Permalink

An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	A method for counting yeast colonies in images of Petri dishes, based on the Fast Radial Transform by Loy and Zelinsky, is introduced and evaluated in the paper. Images, produced by a general-purpose imaging setup, are considered. The performance of the method has been evaluated with a test set of 245 images. The images typically contained between 10 and 70 colonies per dish, with relative coverage of the dish less than 10% of the area. The average counting error (missed colonies) on this set was under 4%. A tool, implementing the method, has been developed in Matlab. The tool provides a batch mode for processing of larger image sets prepared beforehand in the darkroom and it automates the process of counting as much as possible. It is available for download or can be requested from the authors of the paper, in both cases free on charge. A method for counting yeast colonies in images of Petri dishes, based on the Fast Radial Transform by Loy and Zelinsky, is introduced and evaluated in the paper. Images, produced by a general-purpose imaging setup, are considered. The performance of the method has been evaluated with a test set of 245 images. The images typically contained between 10 and 70 colonies per dish, with relative coverage of the dish less than 10% of the area. The average counting error (missed colonies) on this set was under 4%. A tool, implementing the method, has been developed in Matlab. The tool provides a batch mode for processing of larger image sets prepared beforehand in the darkroom and it automates the process of counting as much as possible. It is available for download or can be requested from the authors of the paper, in both cases free on charge. (en)
Title	Automated counting of yeast colonies using the Fast Radial Transform algorithm Automated counting of yeast colonies using the Fast Radial Transform algorithm (en)
skos:prefLabel	Automated counting of yeast colonies using the Fast Radial Transform algorithm Automated counting of yeast colonies using the Fast Radial Transform algorithm (en)
skos:notation	RIV/67985556:_____/11:00355696!RIV11-MSM-67985556
http://linked.open...avai/riv/aktivita	P Z
http://linked.open...avai/riv/aktivity	P(1M0567), Z(AV0Z10750506)
http://linked.open...vai/riv/dodaniDat	2011
http://linked.open...aciTvurceVysledku	Schier, Jan Kovář, Bohumil
http://linked.open.../riv/druhVysledku	D - Článek ve sborníku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Ústav teorie informace a automatizace AV ČR, v. v. i.
http://linked.open...dnocenehoVysledku	187539
http://linked.open...ai/riv/idVysledku	RIV/67985556:_____/11:00355696
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	Colony counter; Yeast colonies; Image segmentation; Fast radial transform (en)
http://linked.open.../riv/klicoveSlovo	Colony counter Yeast colonies Fast radial transform Image segmentation
http://linked.open...ontrolniKodProRIV	[57E6DDEA7B43]
http://linked.open...v/mistoKonaniAkce	Řím
http://linked.open...i/riv/mistoVydani	Lisabon
http://linked.open...i/riv/nazevZdroje	BIOSTEC 2011 4th International Joint Conference on Biomedical Engineering Systems and Technologies
http://linked.open...in/vavai/riv/obor	IN
http://linked.open...ichTvurcuVysledku	2 (xsd:int)
http://linked.open...cetTvurcuVysledku	2 (xsd:int)
http://linked.open...vavai/riv/projekt	Centre for Applied Cybernetics
http://linked.open...UplatneniVysledku	2011
http://linked.open...iv/tvurceVysledku	Kovář, Bohumil Schier, Jan
http://linked.open...vavai/riv/typAkce	WRD - Světová
http://linked.open.../riv/zahajeniAkce	2011-01-26 (xsd:date)
http://linked.open...n/vavai/riv/zamer	Pokročilé matematické metody získávání, zpracování a využití informací a znalostí ve složitých a nedeterministických systémech
number of pages	6 (xsd:int)
http://purl.org/ne...btex#hasPublisher	SciTePress
https://schema.org/isbn	978-989-8425-36-2

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