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  • Conformation family is a useful concept for classification of proteins and nucleic acid structures. This classification is used in methods for prediction of protein structures, various model building programs, and as a tool for protein structure verification. There is no clear definition of conformation family in the literature. Clusters of similar structures usually represent conformation family. Conformation families for tripeptides were determined by a method of conformation-family search in multidimensional torsion-angle space [1]. The families were classified according to positions in the Ramachandran map and studied for the purpose of automatic protein model building. The model building method was tested on a green fluorescent protein which is frequently used as a reporter protein [2]. The crystal structure with PDB code 1EMB was selected for the testing. The structure of the protein was build up automatically with a program NUT [3] and the structure building was analyzed in details
  • Conformation family is a useful concept for classification of proteins and nucleic acid structures. This classification is used in methods for prediction of protein structures, various model building programs, and as a tool for protein structure verification. There is no clear definition of conformation family in the literature. Clusters of similar structures usually represent conformation family. Conformation families for tripeptides were determined by a method of conformation-family search in multidimensional torsion-angle space [1]. The families were classified according to positions in the Ramachandran map and studied for the purpose of automatic protein model building. The model building method was tested on a green fluorescent protein which is frequently used as a reporter protein [2]. The crystal structure with PDB code 1EMB was selected for the testing. The structure of the protein was build up automatically with a program NUT [3] and the structure building was analyzed in details (en)
  • Konformační modely rodin tripeptidů, zjištěné metodou hledání konformačních rodin v mnoharozměrném prostoru torzních úhlů, byly klasifikovány dle svých pozic v Ramachandranově mapě a studovány pro účely automatického modelování proteinů, jež bylo následně provedeno na zeleném fluoreskujícím priteinu. Výsledky byly porovnány s modely vytvořenými na základě mono- a dipeptidů. (cs)
Title
  • The use of tripeptide conformation families in protein model building
  • The use of tripeptide conformation families in protein model building (en)
  • Využití konformačních rodin tripeptidů pro tvorbu modelů peptidů (cs)
skos:prefLabel
  • The use of tripeptide conformation families in protein model building
  • The use of tripeptide conformation families in protein model building (en)
  • Využití konformačních rodin tripeptidů pro tvorbu modelů peptidů (cs)
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  • RIV/62157124:16370/06:00000737!RIV07-MSM-16370___
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  • RIV/62157124:16370/06:00000737
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  • tripeptides; conformational families; NUT (en)
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  • Pavelčík, František
  • Gavurníková, Gabriela
  • Kollárová, Marta
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  • 16370
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