About: Box counting method in recording, processing and evaluation of genomic signals

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	Fractals are geometrical shapes with non integer dimension and invariance against change of scale factor. For each geometrical shape, a single parameter - dimension - can be calculated. For calculation, Box Counting Method (BCM) was chosen. Determination of dimension on one level of resolution is not sufficient, it is necessary to subsequently process it and determine multifractal coefficient. Aim of our interest consists in analysis of images obtained from a linear sequence of DNA code. For analysis itself, sequences of Homo sapiens and Citrobacter youngae were chosen. Results of calculation are fractal coefficients derived from dimensions of generated structures. This result enables to introduce criterion for sequences determination. Graphical outputs may be also represented as multidimensional alternative transformation of linearly recorded genomic signal. Algorithms were developed in computational environment MATLAB. Data were downloaded from a public database EMBL (ESI) and GenBank (NCBI). Fractals are geometrical shapes with non integer dimension and invariance against change of scale factor. For each geometrical shape, a single parameter - dimension - can be calculated. For calculation, Box Counting Method (BCM) was chosen. Determination of dimension on one level of resolution is not sufficient, it is necessary to subsequently process it and determine multifractal coefficient. Aim of our interest consists in analysis of images obtained from a linear sequence of DNA code. For analysis itself, sequences of Homo sapiens and Citrobacter youngae were chosen. Results of calculation are fractal coefficients derived from dimensions of generated structures. This result enables to introduce criterion for sequences determination. Graphical outputs may be also represented as multidimensional alternative transformation of linearly recorded genomic signal. Algorithms were developed in computational environment MATLAB. Data were downloaded from a public database EMBL (ESI) and GenBank (NCBI). (en)
Title	Box counting method in recording, processing and evaluation of genomic signals Box counting method in recording, processing and evaluation of genomic signals (en)
skos:prefLabel	Box counting method in recording, processing and evaluation of genomic signals Box counting method in recording, processing and evaluation of genomic signals (en)
skos:notation	RIV/62156489:43210/10:00184582!RIV12-MSM-43210___
http://linked.open...avai/riv/aktivita	P
http://linked.open...avai/riv/aktivity	P(GD102/09/H083), P(KAN208130801), P(LC06035)
http://linked.open...iv/cisloPeriodika	5
http://linked.open...vai/riv/dodaniDat	2012
http://linked.open...aciTvurceVysledku	Trnková, Libuše Adam, Vojtěch Hubálek, Jaromír Kizek, René
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Mendelova univerzita v Brně / Agronomická fakulta
http://linked.open...dnocenehoVysledku	249182
http://linked.open...ai/riv/idVysledku	RIV/62156489:43210/10:00184582
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	fractals; box counting method; genomic signal (en)
http://linked.open.../riv/klicoveSlovo	fractals box counting method genomic signal
http://linked.open...odStatuVydavatele	IN - Indická republika
http://linked.open...ontrolniKodProRIV	[C51C069D0CAB]
http://linked.open...i/riv/nazevZdroje	Journal of Biochemical Technology
http://linked.open...in/vavai/riv/obor	CB
http://linked.open...ichTvurcuVysledku	4 (xsd:int)
http://linked.open...cetTvurcuVysledku	8 (xsd:int)
http://linked.open...vavai/riv/projekt	Information Technology in Biomedical Engineering New design and exploiting nanobiosensors and nanosensors to target medicine (NANOSEMED) Centre of Biophysical Chemistry, Bioelectrochemistry and Bioanalysis. New Tools for Genomics, Proteomics and Biomedicine.
http://linked.open...UplatneniVysledku	2010
http://linked.open...v/svazekPeriodika	2
http://linked.open...iv/tvurceVysledku	Adam, Vojtěch Hubálek, Jaromír Kizek, René Nedvěd, J. Provazník, Ivo Trnková, Libuše Valla, Martin Pavlík, Dušan
issn	0974-2328
number of pages	3 (xsd:int)
http://localhost/t...ganizacniJednotka	43210

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