About: Genome-Wide Analysis of Repeat Diversity across the Family Musaceae

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An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	Background: The banana family (Musaceae) includes genetically a diverse group of species and their diploid and polyploid hybrids that are widely cultivated in the tropics. In spite of their socio-economic importance, the knowledge of Musaceae genomes is basically limited to draft genome assemblies of two species, Musa acuminata and M. balbisiana. Here we aimed to complement this information by analyzing repetitive genome fractions of six species selected to represent various phylogenetic groups within the family. Results: Low-pass sequencing of M. acuminata, M. ornata, M. textilis, M. beccarii, M. balbisiana, and Ensete gilletii genomes was performed using a 454/Roche platform. Sequence reads were subjected to analysis of their overall intra-and interspecific similarities and, all major repeat families were quantified using graph-based clustering. Background: The banana family (Musaceae) includes genetically a diverse group of species and their diploid and polyploid hybrids that are widely cultivated in the tropics. In spite of their socio-economic importance, the knowledge of Musaceae genomes is basically limited to draft genome assemblies of two species, Musa acuminata and M. balbisiana. Here we aimed to complement this information by analyzing repetitive genome fractions of six species selected to represent various phylogenetic groups within the family. Results: Low-pass sequencing of M. acuminata, M. ornata, M. textilis, M. beccarii, M. balbisiana, and Ensete gilletii genomes was performed using a 454/Roche platform. Sequence reads were subjected to analysis of their overall intra-and interspecific similarities and, all major repeat families were quantified using graph-based clustering. (en)
Title	Genome-Wide Analysis of Repeat Diversity across the Family Musaceae Genome-Wide Analysis of Repeat Diversity across the Family Musaceae (en)
skos:prefLabel	Genome-Wide Analysis of Repeat Diversity across the Family Musaceae Genome-Wide Analysis of Repeat Diversity across the Family Musaceae (en)
skos:notation	RIV/61389030:_____/14:00430448!RIV15-GA0-61389030
http://linked.open...avai/riv/aktivita	I P
http://linked.open...avai/riv/aktivity	I, P(GBP501/12/G090), P(LG12021), P(LH11058), P(LO1204)
http://linked.open...iv/cisloPeriodika	6
http://linked.open...vai/riv/dodaniDat	2015
http://linked.open...aciTvurceVysledku	Hřibová, Eva Doležel, Jaroslav
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Ústav experimentální botaniky AV ČR, v. v. i.
http://linked.open...dnocenehoVysledku	18139
http://linked.open...ai/riv/idVysledku	RIV/61389030:_____/14:00430448
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	Generation sequencing reveals; transposable elements; retrotransposons (en)
http://linked.open.../riv/klicoveSlovo	Generation sequencing reveals transposable elements retrotransposons
http://linked.open...odStatuVydavatele	US - Spojené státy americké
http://linked.open...ontrolniKodProRIV	[36A7CBE0083D]
http://linked.open...i/riv/nazevZdroje	PLoS ONE
http://linked.open...in/vavai/riv/obor	EB
http://linked.open...ichTvurcuVysledku	2 (xsd:int)
http://linked.open...cetTvurcuVysledku	6 (xsd:int)
http://linked.open...vavai/riv/projekt	Udržitelný rozvoj výzkumu v Centru regionu Haná Evolution and Function of Complex Plant Genomes Collaboration with Bioversity International on global analysis and conservation of genetic diversity of bananas The role of repetitive DNA in plant genome architecture and function
http://linked.open...UplatneniVysledku	2014
http://linked.open...v/svazekPeriodika	9
http://linked.open...iv/tvurceVysledku	Doležel, Jaroslav Hřibová, Eva Macas, Jiří Novák, Petr Neumann, Pavel Koblížková, Andrea
http://linked.open...ain/vavai/riv/wos	000337738600014
issn	1932-6203
number of pages	12 (xsd:int)
http://bibframe.org/vocab/doi	10.1371/journal.pone.0098918

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