About: Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS

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About: Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS Goto Sponge NotDistinct Permalink

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Attributes	Values
rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	The genome of bread wheat (Triticum aestivum) is predicted to be greater than 16 Gbp in size and consist predominantly of repetitive elements, making the sequencing and assembly of this genome a major challenge. We have reduced genome sequence complexity by isolating chromosome arm 7DS and applied second-generation technology and appropriate algorithmic analysis to sequence and assemble low copy and genic regions of this chromosome arm. The assembly represents approximately 40% of the chromosome arm and all known 7DS genes. Comparison of the 7DS assembly with the sequenced genomes of rice (Oryza sativa) and Brachypodium distachyon identified large regions of conservation. The syntenic relationship between wheat, B. distachyon and O. sativa, along with available genetic mapping data, has been used to produce an annotated draft 7DS syntenic build, which is publicly available at http://www.wheatgenome.info. The genome of bread wheat (Triticum aestivum) is predicted to be greater than 16 Gbp in size and consist predominantly of repetitive elements, making the sequencing and assembly of this genome a major challenge. We have reduced genome sequence complexity by isolating chromosome arm 7DS and applied second-generation technology and appropriate algorithmic analysis to sequence and assemble low copy and genic regions of this chromosome arm. The assembly represents approximately 40% of the chromosome arm and all known 7DS genes. Comparison of the 7DS assembly with the sequenced genomes of rice (Oryza sativa) and Brachypodium distachyon identified large regions of conservation. The syntenic relationship between wheat, B. distachyon and O. sativa, along with available genetic mapping data, has been used to produce an annotated draft 7DS syntenic build, which is publicly available at http://www.wheatgenome.info. (en)
Title	Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS (en)
skos:prefLabel	Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS (en)
skos:notation	RIV/61389030:_____/11:00365378!RIV12-AV0-61389030
http://linked.open...avai/riv/aktivita	P Z
http://linked.open...avai/riv/aktivity	P(ED0007/01/01), P(GA521/07/1573), Z(AV0Z50380511)
http://linked.open...iv/cisloPeriodika	7
http://linked.open...vai/riv/dodaniDat	2012
http://linked.open...aciTvurceVysledku	Doležel, Jaroslav Šimková, Hana Kubaláková, Marie
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Ústav experimentální botaniky AV ČR, v. v. i.
http://linked.open...dnocenehoVysledku	228926
http://linked.open...ai/riv/idVysledku	RIV/61389030:_____/11:00365378
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	wheat genome sequence; chromosome 7; genome assembly (en)
http://linked.open.../riv/klicoveSlovo	chromosome 7 genome assembly wheat genome sequence
http://linked.open...odStatuVydavatele	US - Spojené státy americké
http://linked.open...ontrolniKodProRIV	[061087F91FFA]
http://linked.open...i/riv/nazevZdroje	Plant Biotechnology Journal
http://linked.open...in/vavai/riv/obor	EB
http://linked.open...ichTvurcuVysledku	3 (xsd:int)
http://linked.open...cetTvurcuVysledku	17 (xsd:int)
http://linked.open...vavai/riv/projekt	Creation of resources for wheat genomics and map-based cloning of resistance genes from chromosome 7D Centre of the Region Haná for Biotechnological and Agricultural Research
http://linked.open...UplatneniVysledku	2011
http://linked.open...v/svazekPeriodika	9
http://linked.open...iv/tvurceVysledku	Doležel, Jaroslav Kubaláková, Marie Šimková, Hana Batley, J. Berkman, O. J. Edwards, D. Lorenc, M. T. Skarshewski, A.
http://linked.open...ain/vavai/riv/wos	000293659700006
http://linked.open...n/vavai/riv/zamer	Mechanismy regulace růstu a vývoje rostlin na úrovni buněk, orgánů a celých organismů: fyziologické, genetické a molekulárně biologické základy
issn	1467-7644
number of pages	8 (xsd:int)
http://bibframe.org/vocab/doi	10.1111/j.1467-7652.2010.00587.x

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