About: MSTools-Web based application for visualization and presentation of HXMS data

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An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	Hydrogen/Deuterium exchange coupled to mass spectrometry is routinely used to study protein folding and interactions. Major drawback of this technique is the laborious data mining and lack of software tools facilitating this step and allowing easy data interpretation and visualization. Here we present freely accessible set of tools useful in preparation of HXMS experiment as well as in presentation of HXMS data. Simple PHP scripts aid e.g. in drawing of deuteration plots, protection plots, heat map representations, colorization of protein models, peptide maps Hydrogen/Deuterium exchange coupled to mass spectrometry is routinely used to study protein folding and interactions. Major drawback of this technique is the laborious data mining and lack of software tools facilitating this step and allowing easy data interpretation and visualization. Here we present freely accessible set of tools useful in preparation of HXMS experiment as well as in presentation of HXMS data. Simple PHP scripts aid e.g. in drawing of deuteration plots, protection plots, heat map representations, colorization of protein models, peptide maps (en)
Title	MSTools-Web based application for visualization and presentation of HXMS data MSTools-Web based application for visualization and presentation of HXMS data (en)
skos:prefLabel	MSTools-Web based application for visualization and presentation of HXMS data MSTools-Web based application for visualization and presentation of HXMS data (en)
skos:notation	RIV/61388971:_____/11:00371617!RIV12-AV0-61388971
http://linked.open...avai/riv/aktivita	I P Z
http://linked.open...avai/riv/aktivity	I, P(GAP207/10/1040), P(KJB500200612), P(LC07017), P(LC545), Z(AV0Z50200510)
http://linked.open...iv/cisloPeriodika	1-3
http://linked.open...vai/riv/dodaniDat	2012
http://linked.open...aciTvurceVysledku	Kavan, Daniel Man, Petr
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Mikrobiologický ústav AV ČR, v. v. i.
http://linked.open...dnocenehoVysledku	214153
http://linked.open...ai/riv/idVysledku	RIV/61388971:_____/11:00371617
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	Hydrogen/deuterium exchange; Data visualization; Software (en)
http://linked.open.../riv/klicoveSlovo	Hydrogen/deuterium exchange Software Data visualization
http://linked.open...odStatuVydavatele	NL - Nizozemsko
http://linked.open...ontrolniKodProRIV	[1B24DBF96AA8]
http://linked.open...i/riv/nazevZdroje	International Journal of Mass Spectrometry
http://linked.open...in/vavai/riv/obor	EE
http://linked.open...ichTvurcuVysledku	2 (xsd:int)
http://linked.open...cetTvurcuVysledku	2 (xsd:int)
http://linked.open...vavai/riv/projekt	Proteomic characterization of human natural killer cell membrane microdomains Functional Organisation of the Cell Oncoproteomics Centre Analysis of protein complexes of killer cell receptors using chemical cross-linking, surface labeling, isotope exchange, mass spectrometry and NMR.
http://linked.open...UplatneniVysledku	2011
http://linked.open...v/svazekPeriodika	302
http://linked.open...iv/tvurceVysledku	Kavan, Daniel Man, Petr
http://linked.open...ain/vavai/riv/wos	000290693800008
http://linked.open...n/vavai/riv/zamer	Microorganisms in Research and Biotechnology
issn	1387-3806
number of pages	6 (xsd:int)
http://bibframe.org/vocab/doi	10.1016/j.ijms.2010.07.030

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