About: Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa

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About: Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa Goto Sponge NotDistinct Permalink

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	In order to uncover the genetic basis of phenotypic trait variation, we used 448 unrelated wild accessions of black cottonwood (Populus trichocarpa) from much of its range in western North America. Extensive data from large-scale trait phenotyping (with spatial and temporal replications within a common garden) and genotyping (with a 34K Populus single nucleotide polymorphism (SNP) array) of all accessions were used for gene discovery in a genome-wide association study (GWAS). We performed GWAS with 40 biomass, ecophysiology and phenology traits and 29355 filtered SNPs representing 3518 genes. The association analyses were carried out using a Unified Mixed Model accounting for population structure effects among accessions. We uncovered 410 significant SNPs using a Bonferroni-corrected threshold (P<1.7x10-6). Markers were found across 19 chromosomes, explained 1-13% of trait variation, and implicated 275 unique genes in trait associations. Phenology had the largest number of associated genes (240 genes In order to uncover the genetic basis of phenotypic trait variation, we used 448 unrelated wild accessions of black cottonwood (Populus trichocarpa) from much of its range in western North America. Extensive data from large-scale trait phenotyping (with spatial and temporal replications within a common garden) and genotyping (with a 34K Populus single nucleotide polymorphism (SNP) array) of all accessions were used for gene discovery in a genome-wide association study (GWAS). We performed GWAS with 40 biomass, ecophysiology and phenology traits and 29355 filtered SNPs representing 3518 genes. The association analyses were carried out using a Unified Mixed Model accounting for population structure effects among accessions. We uncovered 410 significant SNPs using a Bonferroni-corrected threshold (P<1.7x10-6). Markers were found across 19 chromosomes, explained 1-13% of trait variation, and implicated 275 unique genes in trait associations. Phenology had the largest number of associated genes (240 genes (en)
Title	Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa (en)
skos:prefLabel	Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa (en)
skos:notation	RIV/60460709:41320/14:63635!RIV15-MSM-41320___
http://linked.open...avai/riv/aktivita	S
http://linked.open...avai/riv/aktivity	S
http://linked.open...iv/cisloPeriodika	2
http://linked.open...vai/riv/dodaniDat	2015
http://linked.open...aciTvurceVysledku	Klápště, Jaroslav
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Česká zemědělská univerzita v Praze / Fakulta lesnická a dřevařská
http://linked.open...dnocenehoVysledku	18140
http://linked.open...ai/riv/idVysledku	RIV/60460709:41320/14:63635
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	biomass, ecophysiology, phenology, pleiotropy, GWAS, adaptation, SNP array, Unified Mixed Model (en)
http://linked.open.../riv/klicoveSlovo	Unified Mixed Model SNP array GWAS adaptation biomass phenology ecophysiology pleiotropy
http://linked.open...odStatuVydavatele	GB - Spojené království Velké Británie a Severního Irska
http://linked.open...ontrolniKodProRIV	[C7ACFE08B25B]
http://linked.open...i/riv/nazevZdroje	New Phytologist
http://linked.open...in/vavai/riv/obor	GK
http://linked.open...ichTvurcuVysledku	1 (xsd:int)
http://linked.open...cetTvurcuVysledku	14 (xsd:int)
http://linked.open...UplatneniVysledku	2014
http://linked.open...v/svazekPeriodika	203
http://linked.open...iv/tvurceVysledku	Klápště, Jaroslav El-Kassaby, Yousry Guy, Robert Douglas, Carl Mansfield, Shawn Cronk, Quentin Ehlting, Juergen Friedmann, Michael Hannemann, Jan McKown, Athena Muchero, Wellington Porth, Ilga Tuskan, Gerald Geraldes, Armando
http://linked.open...ain/vavai/riv/wos	000337639800019
issn	0028-646X
number of pages	19 (xsd:int)
http://localhost/t...ganizacniJednotka	41320

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