About: Genome wide identification of the immunophilin gene family in Leptosphaeria maculans: A causal agent of blackleg dDisease in oilseed rape (Brassica napus)

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About: Genome wide identification of the immunophilin gene family in Leptosphaeria maculans: A causal agent of blackleg dDisease in oilseed rape (Brassica napus) Goto Sponge NotDistinct Permalink

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	Phoma stem canker (blackleg) is a disease of world-wide importance on oilseed rape (Brassica napus) and can cause serious losses for crops globally. The disease is caused by dothideomycetous fungus, Leptosphaeria maculans, which is highly virulent/aggressive. Cyclophilins (CYPs) and FK506-binding proteins (FKBPs) are ubiquitous proteins belonging to the peptidyl-prolyl cis/trans isomerase (PPIase) family. They are collectively referred to as immunophilins (IMMs). In the present study, IMM genes, CYP and FKBP in haploid strain v23.1.3 of L. maculans genome, were identified and classified. Twelve CYPs and five FKBPs were determined in total. Domain architecture analysis revealed the presence of a conserved cyclophilin-like domain (CLD) in the case of CYPs and FKBP_C in the case of FKBPs. Interestingly, IMMs in L. maculans also subgrouped into single domain (SD) and multidomain (MD) proteins. They were primarily found to be localized in cytoplasm, nuclei, and mitochondria. Homologous and orthologous gen Phoma stem canker (blackleg) is a disease of world-wide importance on oilseed rape (Brassica napus) and can cause serious losses for crops globally. The disease is caused by dothideomycetous fungus, Leptosphaeria maculans, which is highly virulent/aggressive. Cyclophilins (CYPs) and FK506-binding proteins (FKBPs) are ubiquitous proteins belonging to the peptidyl-prolyl cis/trans isomerase (PPIase) family. They are collectively referred to as immunophilins (IMMs). In the present study, IMM genes, CYP and FKBP in haploid strain v23.1.3 of L. maculans genome, were identified and classified. Twelve CYPs and five FKBPs were determined in total. Domain architecture analysis revealed the presence of a conserved cyclophilin-like domain (CLD) in the case of CYPs and FKBP_C in the case of FKBPs. Interestingly, IMMs in L. maculans also subgrouped into single domain (SD) and multidomain (MD) proteins. They were primarily found to be localized in cytoplasm, nuclei, and mitochondria. Homologous and orthologous gen (en)
Title	Genome wide identification of the immunophilin gene family in Leptosphaeria maculans: A causal agent of blackleg dDisease in oilseed rape (Brassica napus) Genome wide identification of the immunophilin gene family in Leptosphaeria maculans: A causal agent of blackleg dDisease in oilseed rape (Brassica napus) (en)
skos:prefLabel	Genome wide identification of the immunophilin gene family in Leptosphaeria maculans: A causal agent of blackleg dDisease in oilseed rape (Brassica napus) Genome wide identification of the immunophilin gene family in Leptosphaeria maculans: A causal agent of blackleg dDisease in oilseed rape (Brassica napus) (en)
skos:notation	RIV/60460709:41210/14:64444!RIV15-MZE-41210___
http://linked.open...avai/riv/aktivita	P S
http://linked.open...avai/riv/aktivity	P(QJ1310227), S
http://linked.open...iv/cisloPeriodika	10
http://linked.open...vai/riv/dodaniDat	2015
http://linked.open...aciTvurceVysledku	Mazáková, Jana Ryšánek, Pavel Zouhar, Miloslav Sandhu Singh, Khushwant
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Česká zemědělská univerzita v Praze / Fakulta agrobiologie, potravinových a přírodních zdrojů
http://linked.open...dnocenehoVysledku	18138
http://linked.open...ai/riv/idVysledku	RIV/60460709:41210/14:64444
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	Immunophilin Gene , Oilseed Rape, Leptosphaeria maculans (en)
http://linked.open.../riv/klicoveSlovo	Immunophilin Gene Oilseed Rape Leptosphaeria maculans
http://linked.open...odStatuVydavatele	CZ - Česká republika
http://linked.open...ontrolniKodProRIV	[DB8BFB347400]
http://linked.open...i/riv/nazevZdroje	OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
http://linked.open...in/vavai/riv/obor	GF
http://linked.open...ichTvurcuVysledku	4 (xsd:int)
http://linked.open...cetTvurcuVysledku	4 (xsd:int)
http://linked.open...vavai/riv/projekt	New findings from biology, epidemiology and resistance of winter rape pathogens to pesticides in the Czech Republic as a base of their integrated management
http://linked.open...UplatneniVysledku	2014
http://linked.open...v/svazekPeriodika	18
http://linked.open...iv/tvurceVysledku	Mazáková, Jana Zouhar, Miloslav Ryšánek, Pavel Sandhu Singh, Khushwant
http://linked.open...ain/vavai/riv/wos	000342303700005
issn	1536-2310
number of pages	13 (xsd:int)
http://localhost/t...ganizacniJednotka	41210

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