About: Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia

Facets (new session)
Description
Metadata
Settings
- owl:sameAs
- Inference Rule:

About: Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia Goto Sponge NotDistinct Permalink

An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

Attributes	Values
rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	Genomic DNA of blueberry red ringspot virus (genus Soymovirus, family Caulimoviridae) from highbush blueberry plants growing for years in the Czech Republic and Slovenia was sequenced. The circular dsDNA genomes consist of 8,303 and 8,299 nt, respectively, and contain eight open reading frames (ORFs) longer than 100 amino acids. The European isolates are 90% to 99% identical in aa sequences of distinct proteins. In contrast to the American New Jersey isolate, in-frame initiation codons have been found upstream from AUG codons of ORFs I, IV and V in the European isolates. These and other differences resulted in a longer capsid protein, reverse transcriptase, movement protein and protein the encoded by ORF VII and reduced (75.4% to 93.7%) amino acid identity with corresponding proteins of the New Jersey isolate. Genomic DNA of blueberry red ringspot virus (genus Soymovirus, family Caulimoviridae) from highbush blueberry plants growing for years in the Czech Republic and Slovenia was sequenced. The circular dsDNA genomes consist of 8,303 and 8,299 nt, respectively, and contain eight open reading frames (ORFs) longer than 100 amino acids. The European isolates are 90% to 99% identical in aa sequences of distinct proteins. In contrast to the American New Jersey isolate, in-frame initiation codons have been found upstream from AUG codons of ORFs I, IV and V in the European isolates. These and other differences resulted in a longer capsid protein, reverse transcriptase, movement protein and protein the encoded by ORF VII and reduced (75.4% to 93.7%) amino acid identity with corresponding proteins of the New Jersey isolate. (en)
Title	Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia (en)
skos:prefLabel	Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia (en)
skos:notation	RIV/60077344:_____/11:00367250!RIV12-AV0-60077344
http://linked.open...avai/riv/aktivita	Z
http://linked.open...avai/riv/aktivity	Z(AV0Z50510513)
http://linked.open...iv/cisloPeriodika	10
http://linked.open...vai/riv/dodaniDat	2012
http://linked.open...aciTvurceVysledku	Přibylová, Jaroslava Petrzik, Karel Špak, Josef
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Biologické centrum AV ČR, v. v. i.
http://linked.open...dnocenehoVysledku	191378
http://linked.open...ai/riv/idVysledku	RIV/60077344:_____/11:00367250
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	Complete genome; blueberry virus; highbush blueberry (en)
http://linked.open.../riv/klicoveSlovo	Complete genome blueberry virus highbush blueberry
http://linked.open...odStatuVydavatele	AT - Rakouská republika
http://linked.open...ontrolniKodProRIV	[371F156DC50D]
http://linked.open...i/riv/nazevZdroje	Archives of Virology
http://linked.open...in/vavai/riv/obor	EE
http://linked.open...ichTvurcuVysledku	3 (xsd:int)
http://linked.open...cetTvurcuVysledku	4 (xsd:int)
http://linked.open...UplatneniVysledku	2011
http://linked.open...v/svazekPeriodika	156
http://linked.open...iv/tvurceVysledku	Mavrič-Pleško, I. Petrzik, Karel Přibylová, Jaroslava Špak, Josef
http://linked.open...ain/vavai/riv/wos	000296510200026
http://linked.open...n/vavai/riv/zamer	Výzkum struktury genetické informace rostlin a jejich patogenů na molekulární úrovni, indukce a analýza cílených změn genomu a plastomu a studium fotosyntetických procesů a projevů dědičnosti v interakci s prostředím a patogeny
issn	0304-8608
number of pages	3 (xsd:int)
http://bibframe.org/vocab/doi	10.1007/s00705-011-1077-x

Faceted Search & Find service v1.16.118 as of Jun 21 2024

Alternative Linked Data Documents: ODE Content Formats:

RDF

ODATA

Microdata

About

OpenLink Virtuoso version 07.20.3240 as of Jun 21 2024, on Linux (x86_64-pc-linux-gnu), Single-Server Edition (126 GB total memory, 58 GB memory in use)
Data on this page belongs to its respective rights holders.
Virtuoso Faceted Browser Copyright © 2009-2024 OpenLink Software