About: The Capsella rubella genome and the genomic consequences of rapid mating system evolution

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About: The Capsella rubella genome and the genomic consequences of rapid mating system evolution Goto Sponge NotDistinct Permalink

An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

Attributes	Values
rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
rdfs:seeAlso	http://www.nature.com/ng/journal/v45/n7/full/ng.2669.html
Description	The shift from outcrossing to selfing is common in flowering plants(1,2), but the genomic consequences and the speed at which they emerge remain poorly understood. An excellent model for understanding the evolution of self fertilization is provided by Capsella rubella, which became self compatible <200,000 years ago. We report a C. rubella reference genome sequence and compare RNA expression and polymorphism patterns between C. rubella and its outcrossing progenitor Capsella grandiflora. We found a clear shift in the expression of genes associated with flowering phenotypes, similar to that seen in Arabidopsis, in which self fertilization evolved about 1 million years ago. Comparisons of the two Capsella species showed evidence of rapid genome-wide relaxation of purifying selection in C. rubella without a concomitant change in transposable element abundance. The shift from outcrossing to selfing is common in flowering plants(1,2), but the genomic consequences and the speed at which they emerge remain poorly understood. An excellent model for understanding the evolution of self fertilization is provided by Capsella rubella, which became self compatible <200,000 years ago. We report a C. rubella reference genome sequence and compare RNA expression and polymorphism patterns between C. rubella and its outcrossing progenitor Capsella grandiflora. We found a clear shift in the expression of genes associated with flowering phenotypes, similar to that seen in Arabidopsis, in which self fertilization evolved about 1 million years ago. Comparisons of the two Capsella species showed evidence of rapid genome-wide relaxation of purifying selection in C. rubella without a concomitant change in transposable element abundance. (en)
Title	The Capsella rubella genome and the genomic consequences of rapid mating system evolution The Capsella rubella genome and the genomic consequences of rapid mating system evolution (en)
skos:prefLabel	The Capsella rubella genome and the genomic consequences of rapid mating system evolution The Capsella rubella genome and the genomic consequences of rapid mating system evolution (en)
skos:notation	RIV/00216224:14740/13:00066453!RIV14-MSM-14740___
http://linked.open...avai/riv/aktivita	P
http://linked.open...avai/riv/aktivity	P(ED1.1.00/02.0068), P(GBP501/12/G090)
http://linked.open...iv/cisloPeriodika	7
http://linked.open...vai/riv/dodaniDat	2014
http://linked.open...aciTvurceVysledku	Lysák, Martin Mandáková, Terezie
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Masarykova univerzita / Středoevropský technologický institut
http://linked.open...dnocenehoVysledku	64247
http://linked.open...ai/riv/idVysledku	RIV/00216224:14740/13:00066453
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	ARABIDOPSIS-THALIANA; TRANSPOSABLE ELEMENTS; MOLECULAR EVOLUTION; RECENT SPECIATION; SEQUENCE; EXPRESSION; GENES; GRANDIFLORA; ANNOTATION; MUTATIONS (en)
http://linked.open.../riv/klicoveSlovo	MOLECULAR EVOLUTION SEQUENCE ANNOTATION EXPRESSION MUTATIONS GRANDIFLORA RECENT SPECIATION TRANSPOSABLE ELEMENTS ARABIDOPSIS-THALIANA GENES
http://linked.open...odStatuVydavatele	US - Spojené státy americké
http://linked.open...ontrolniKodProRIV	[FA136C4E1DE1]
http://linked.open...i/riv/nazevZdroje	Nature Genetics
http://linked.open...in/vavai/riv/obor	EB
http://linked.open...ichTvurcuVysledku	2 (xsd:int)
http://linked.open...cetTvurcuVysledku	36 (xsd:int)
http://linked.open...vavai/riv/projekt	Central european institute of technology Evolution and Function of Complex Plant Genomes
http://linked.open...UplatneniVysledku	2013
http://linked.open...v/svazekPeriodika	45
http://linked.open...iv/tvurceVysledku	Lysák, Martin Schmutz, Jeremy Mandáková, Terezie Wang, Wei Maumus, Florian Blanchette, Mathieu Hazzouri, Khaled M. Platts, Adrian E. Vello, Emilio Wright, Stephen I. Agren, J. Arvid Andolfatto, Peter Brandvain, Yaniv Chapman, Jarrod Clark, Richard M. Coop, Graham Escobar, Juan S. Gaut, Brandon S. Grimwood, Jane Guo, Ya-Long Henz, Stefan R. Hu, Tina T. Jenkins, Jerry Koenig, Daniel Newman, L. Killian Nordborg, Magnus Prochnik, Simon Quesneville, Hadi Rokhsar, Daniel Shu, Shengqiang Slotte, Tanja Smith, Lisa M. Steffen, Joshua Steige, Kim Takuno, Shohei Weigel, Detlef
http://linked.open...ain/vavai/riv/wos	000321005200022
issn	1061-4036
number of pages	7 (xsd:int)
http://bibframe.org/vocab/doi	10.1038/ng.2669
http://localhost/t...ganizacniJednotka	14740

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