About: Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden

Facets (new session)
Description
Metadata
Settings
- owl:sameAs
- Inference Rule:

About: Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden Goto Sponge NotDistinct Permalink

An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

Attributes	Values
rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
rdfs:seeAlso	http://www.nature.com/ng/journal/v45/n8/full/ng.2678.html
Description	Despite advances in sequencing, the goal of obtaining a comprehensive view of genetic variation in populations is still far from reached. We sequenced 180 lines of A. thaliana from Sweden to obtain as complete a picture as possible of variation in a single region. Whereas simple polymorphisms in the unique portion of the genome are readily identified, other polymorphisms are not. The massive variation in genome size identified by flow cytometry seems largely to be due to 45S rDNA copy number variation, with lines from northern Sweden having particularly large numbers of copies. Strong selection is evident in the form of long-range linkage disequilibrium (LD), as well as in LD between nearby compensatory mutations. Many footprints of selective sweeps were found in lines from northern Sweden, and a massive global sweep was shown to have involved a 700-kb transposition. Despite advances in sequencing, the goal of obtaining a comprehensive view of genetic variation in populations is still far from reached. We sequenced 180 lines of A. thaliana from Sweden to obtain as complete a picture as possible of variation in a single region. Whereas simple polymorphisms in the unique portion of the genome are readily identified, other polymorphisms are not. The massive variation in genome size identified by flow cytometry seems largely to be due to 45S rDNA copy number variation, with lines from northern Sweden having particularly large numbers of copies. Strong selection is evident in the form of long-range linkage disequilibrium (LD), as well as in LD between nearby compensatory mutations. Many footprints of selective sweeps were found in lines from northern Sweden, and a massive global sweep was shown to have involved a 700-kb transposition. (en)
Title	Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden (en)
skos:prefLabel	Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden (en)
skos:notation	RIV/00216224:14740/13:00066452!RIV14-GA0-14740___
http://linked.open...avai/riv/aktivita	P
http://linked.open...avai/riv/aktivity	P(GAP506/12/0668), P(GBP501/12/G090)
http://linked.open...iv/cisloPeriodika	8
http://linked.open...vai/riv/dodaniDat	2014
http://linked.open...aciTvurceVysledku	Lysák, Martin Mandáková, Terezie
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Masarykova univerzita / Středoevropský technologický institut
http://linked.open...dnocenehoVysledku	86464
http://linked.open...ai/riv/idVysledku	RIV/00216224:14740/13:00066452
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	RIBOSOMAL-RNA GENES; LINKAGE DISEQUILIBRIUM; WIDE ASSOCIATION; NATURAL VARIATION; DNA; POPULATIONS; SEQUENCE; POLYMORPHISM; METHYLATION; ACCESSIONS (en)
http://linked.open.../riv/klicoveSlovo	LINKAGE DISEQUILIBRIUM NATURAL VARIATION WIDE ASSOCIATION SEQUENCE POLYMORPHISM METHYLATION POPULATIONS DNA RIBOSOMAL-RNA GENES ACCESSIONS
http://linked.open...odStatuVydavatele	US - Spojené státy americké
http://linked.open...ontrolniKodProRIV	[0DD6F1D0D076]
http://linked.open...i/riv/nazevZdroje	Nature Genetics
http://linked.open...in/vavai/riv/obor	EB
http://linked.open...ichTvurcuVysledku	2 (xsd:int)
http://linked.open...cetTvurcuVysledku	18 (xsd:int)
http://linked.open...vavai/riv/projekt	Evolution and Function of Complex Plant Genomes Evolutionary patterns in polyploid complexes: congruent or discordant histories in three examples from the Brassicaceae family?
http://linked.open...UplatneniVysledku	2013
http://linked.open...v/svazekPeriodika	45
http://linked.open...iv/tvurceVysledku	Lysák, Martin Mandáková, Terezie Nordborg, Magnus Farlow, Ashley Hellmann, Ines Huber, Christian D. Korte, Arthur Korte, Pamela Long, Quan Meng, Dazhe Nizhynska, Viktoria Platzer, Alexander Rabanal, Fernando A. Sedman, Laura Seren, Uemit Vilhjálmsson, Bjarni J. Voronin, Viktor Zhang, Qingrun
http://linked.open...ain/vavai/riv/wos	000322374900010
issn	1061-4036
number of pages	8 (xsd:int)
http://bibframe.org/vocab/doi	10.1038/ng.2678
http://localhost/t...ganizacniJednotka	14740

Faceted Search & Find service v1.16.118 as of Jun 21 2024

Alternative Linked Data Documents: ODE Content Formats:

RDF

ODATA

Microdata

About

OpenLink Virtuoso version 07.20.3240 as of Jun 21 2024, on Linux (x86_64-pc-linux-gnu), Single-Server Edition (126 GB total memory, 48 GB memory in use)
Data on this page belongs to its respective rights holders.
Virtuoso Faceted Browser Copyright © 2009-2024 OpenLink Software