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Description
  • In this tool paper, we target the problem of unique annotation of organism-specific computational models presented in a public model database. In particular, we present Biochemical Space, a novel annotation methodology accompanied with a set of software tools that allow to create, manage and maintain the Biochemical Space content. The main idea behind is to create a transparent well-annotated reaction network of chemical entities and elemental reactions onto which the mathematical models are projected. For a given organism, the Biochemical Space represents a unifying platform for understanding of the related biological processes.
  • In this tool paper, we target the problem of unique annotation of organism-specific computational models presented in a public model database. In particular, we present Biochemical Space, a novel annotation methodology accompanied with a set of software tools that allow to create, manage and maintain the Biochemical Space content. The main idea behind is to create a transparent well-annotated reaction network of chemical entities and elemental reactions onto which the mathematical models are projected. For a given organism, the Biochemical Space represents a unifying platform for understanding of the related biological processes. (en)
Title
  • Biochemical Space: A Framework for Systemic Annotation of Biological Models
  • Biochemical Space: A Framework for Systemic Annotation of Biological Models (en)
skos:prefLabel
  • Biochemical Space: A Framework for Systemic Annotation of Biological Models
  • Biochemical Space: A Framework for Systemic Annotation of Biological Models (en)
skos:notation
  • RIV/00216224:14330/14:00076022!RIV15-MSM-14330___
http://linked.open...avai/riv/aktivita
http://linked.open...avai/riv/aktivity
  • P(EE2.3.20.0256), S
http://linked.open...vai/riv/dodaniDat
http://linked.open...aciTvurceVysledku
http://linked.open.../riv/druhVysledku
http://linked.open...iv/duvernostUdaju
http://linked.open...titaPredkladatele
http://linked.open...dnocenehoVysledku
  • 5300
http://linked.open...ai/riv/idVysledku
  • RIV/00216224:14330/14:00076022
http://linked.open...riv/jazykVysledku
http://linked.open.../riv/klicovaSlova
  • biological models; model annotation; systems biology; cyanobacteria (en)
http://linked.open.../riv/klicoveSlovo
http://linked.open...ontrolniKodProRIV
  • [0E838A644335]
http://linked.open...v/mistoKonaniAkce
  • Berlin
http://linked.open...i/riv/mistoVydani
  • Amsterdam
http://linked.open...i/riv/nazevZdroje
  • Proceedings of the 5th International Workshop on Interactions between Computer Science and Biology (CS2Bio’14)
http://linked.open...in/vavai/riv/obor
http://linked.open...ichTvurcuVysledku
http://linked.open...cetTvurcuVysledku
http://linked.open...vavai/riv/projekt
http://linked.open...UplatneniVysledku
http://linked.open...iv/tvurceVysledku
  • Šafránek, David
  • Červený, Jan
  • Klement, Matej
  • Steuer, Ralf
  • Děd, Tadeáš
  • Müller, Stefan
http://linked.open...vavai/riv/typAkce
http://linked.open.../riv/zahajeniAkce
issn
  • 1571-0661
number of pages
http://bibframe.org/vocab/doi
  • 10.1016/j.entcs.2014.06.013
http://purl.org/ne...btex#hasPublisher
  • Elsevier
http://localhost/t...ganizacniJednotka
  • 14330
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