About: Towards a Realistic Distribution of Cells in Synthetically Generated 3D Cell Populations

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An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	In fluorescence microscopy, the proper evaluation of image segmentation algorithms is still an open problem. In the field of cell segmentation, such evaluation can be seen as a study of the given algorithm how well it can discover individual cells as a function of the number of them in an image (size of cell population), their mutual positions (density of cell clusters), and the level of noise. Principally, there are two approaches to the evaluation. One approach requires real input images and an expert that verifies the segmentation results. This is, however, expert dependent and, namely when handling 3D data, very tedious. The second approach uses synthetic images with ground truth data to which the segmentation result is compared objectively. In this paper, we propose a new method for generating synthetic 3D images showing naturally distributed cell populations attached to microscope slide. Cell count and clustering probability are user parameters of the method. In fluorescence microscopy, the proper evaluation of image segmentation algorithms is still an open problem. In the field of cell segmentation, such evaluation can be seen as a study of the given algorithm how well it can discover individual cells as a function of the number of them in an image (size of cell population), their mutual positions (density of cell clusters), and the level of noise. Principally, there are two approaches to the evaluation. One approach requires real input images and an expert that verifies the segmentation results. This is, however, expert dependent and, namely when handling 3D data, very tedious. The second approach uses synthetic images with ground truth data to which the segmentation result is compared objectively. In this paper, we propose a new method for generating synthetic 3D images showing naturally distributed cell populations attached to microscope slide. Cell count and clustering probability are user parameters of the method. (en)
Title	Towards a Realistic Distribution of Cells in Synthetically Generated 3D Cell Populations Towards a Realistic Distribution of Cells in Synthetically Generated 3D Cell Populations (en)
skos:prefLabel	Towards a Realistic Distribution of Cells in Synthetically Generated 3D Cell Populations Towards a Realistic Distribution of Cells in Synthetically Generated 3D Cell Populations (en)
skos:notation	RIV/00216224:14330/13:00066208!RIV14-GA0-14330___
http://linked.open...avai/riv/aktivita	P
http://linked.open...avai/riv/aktivity	P(GBP302/12/G157)
http://linked.open...vai/riv/dodaniDat	2014
http://linked.open...aciTvurceVysledku	Ulman, Vladimír Svoboda, David
http://linked.open.../riv/druhVysledku	D - Článek ve sborníku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Masarykova univerzita / Fakulta informatiky
http://linked.open...dnocenehoVysledku	111342
http://linked.open...ai/riv/idVysledku	RIV/00216224:14330/13:00066208
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	cell populations; simulation; cross-correlation (en)
http://linked.open.../riv/klicoveSlovo	simulation cell populations cross-correlation
http://linked.open...ontrolniKodProRIV	[7CC061552DBE]
http://linked.open...v/mistoKonaniAkce	Naples, Italy
http://linked.open...i/riv/mistoVydani	Berlin, Heidelberg
http://linked.open...i/riv/nazevZdroje	17th International Conference on Image Analysys and Processing - ICIAP 2013
http://linked.open...in/vavai/riv/obor	JD
http://linked.open...ichTvurcuVysledku	2 (xsd:int)
http://linked.open...cetTvurcuVysledku	2 (xsd:int)
http://linked.open...vavai/riv/projekt	Dynamics and Organization of Chromosomes in the Cell Cycle and during Differentiation under Normal and Pathological Conditions
http://linked.open...UplatneniVysledku	2013
http://linked.open...iv/tvurceVysledku	Svoboda, David Ulman, Vladimír
http://linked.open...vavai/riv/typAkce	WRD - Světová
http://linked.open...ain/vavai/riv/wos	000329811200044
http://linked.open.../riv/zahajeniAkce	2013-09-11 (xsd:date)
issn	0302-9743
number of pages	10 (xsd:int)
http://bibframe.org/vocab/doi	10.1007/978-3-642-41184-7_44
http://purl.org/ne...btex#hasPublisher	Springer-Verlag
https://schema.org/isbn	9783642411830
http://localhost/t...ganizacniJednotka	14330

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