About: Generation of 3D Digital Phantoms of Colon Tissue

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An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	Although segmentation of biomedical image data has been paid a lot of attention for many years, this crucial task still meets the problem of the correctness of the obtained results. Especially in the case of optical microscopy, the ground truth (GT), which is a very important tool for the validation of image processing algorithms, is not available. We have developed a toolkit that generates fully 3D digital phantoms, that represent the structure of the studied biological objects. While former papers concentrated on the modelling of isolated cells (such as blood cells), this work focuses on a representative of tissue image type, namely human colon tissue. This phantom image can be submitted to the engine that simulates the image acquisition process. Such synthetic image can be further processed, e.g. deconvolved or segmented. The results can be compared with the GT derived from the digital phantom and the quality of the applied algorithm can be measured. Although segmentation of biomedical image data has been paid a lot of attention for many years, this crucial task still meets the problem of the correctness of the obtained results. Especially in the case of optical microscopy, the ground truth (GT), which is a very important tool for the validation of image processing algorithms, is not available. We have developed a toolkit that generates fully 3D digital phantoms, that represent the structure of the studied biological objects. While former papers concentrated on the modelling of isolated cells (such as blood cells), this work focuses on a representative of tissue image type, namely human colon tissue. This phantom image can be submitted to the engine that simulates the image acquisition process. Such synthetic image can be further processed, e.g. deconvolved or segmented. The results can be compared with the GT derived from the digital phantom and the quality of the applied algorithm can be measured. (en)
Title	Generation of 3D Digital Phantoms of Colon Tissue Generation of 3D Digital Phantoms of Colon Tissue (en)
skos:prefLabel	Generation of 3D Digital Phantoms of Colon Tissue Generation of 3D Digital Phantoms of Colon Tissue (en)
skos:notation	RIV/00216224:14330/11:00067276!RIV14-MSM-14330___
http://linked.open...avai/riv/aktivita	P
http://linked.open...avai/riv/aktivity	P(2B06052), P(LC535)
http://linked.open...vai/riv/dodaniDat	2014
http://linked.open...aciTvurceVysledku	Svoboda, David Stejskal, Stanislav Homola, Ondřej
http://linked.open.../riv/druhVysledku	D - Článek ve sborníku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Masarykova univerzita / Fakulta informatiky
http://linked.open...dnocenehoVysledku	200948
http://linked.open...ai/riv/idVysledku	RIV/00216224:14330/11:00067276
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	Digital phantom; Colon tissue; Simulation; Haralick texture features (en)
http://linked.open.../riv/klicoveSlovo	Colon tissue Digital phantom Haralick texture features Simulation
http://linked.open...ontrolniKodProRIV	[FD7F93812F5B]
http://linked.open...v/mistoKonaniAkce	Burnaby, BC, Canada
http://linked.open...i/riv/mistoVydani	Berlin, Heidelberg
http://linked.open...i/riv/nazevZdroje	Proceedings of 8th International Conference on Image Analysis and Recognition
http://linked.open...in/vavai/riv/obor	JD
http://linked.open...ichTvurcuVysledku	3 (xsd:int)
http://linked.open...cetTvurcuVysledku	3 (xsd:int)
http://linked.open...vavai/riv/projekt	Determination of markers, screening and early diagnostics of cancer diseases using highly automated processing of multidimensional biomedical images Chromosome dynamics and organization during the cell cycle in normal and pathologic conditions
http://linked.open...UplatneniVysledku	2011
http://linked.open...iv/tvurceVysledku	Svoboda, David Homola, Ondřej Stejskal, Stanislav
http://linked.open...vavai/riv/typAkce	WRD - Světová
http://linked.open...ain/vavai/riv/wos	000300562000004
http://linked.open.../riv/zahajeniAkce	2011-06-22 (xsd:date)
issn	0302-9743
number of pages	9 (xsd:int)
http://bibframe.org/vocab/doi	10.1007/978-3-642-21596-4_4
http://purl.org/ne...btex#hasPublisher	Springer-Verlag
https://schema.org/isbn	9783642215957
http://localhost/t...ganizacniJednotka	14330

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