About: Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy

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About: Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy Goto Sponge NotDistinct Permalink

An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	This paper describes free software (called Acquiarium, http://cbia.fi.muni.cz/acquiarium.html) for carrying out the common pipeline of many spatial cell studies using fluorescence microscopy. It addresses image capture, raw image correction, image segmentation, the quantification and spatial arrangement of segmented objects, volume rendering, and statistical evaluation. The software is designed for the easy processing of a collection of many 3D images. It can be used for the analysis of a collection of 2D images or time lapse series of 2D or 3D images as well. It has a modular design and is extensible via plug-ins. The paper gives an overview of the software and its key design ideas. This paper describes free software (called Acquiarium, http://cbia.fi.muni.cz/acquiarium.html) for carrying out the common pipeline of many spatial cell studies using fluorescence microscopy. It addresses image capture, raw image correction, image segmentation, the quantification and spatial arrangement of segmented objects, volume rendering, and statistical evaluation. The software is designed for the easy processing of a collection of many 3D images. It can be used for the analysis of a collection of 2D images or time lapse series of 2D or 3D images as well. It has a modular design and is extensible via plug-ins. The paper gives an overview of the software and its key design ideas. (en)
Title	Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy (en)
skos:prefLabel	Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy (en)
skos:notation	RIV/00216224:14330/09:00035583!RIV11-MSM-14330___
http://linked.open...avai/riv/aktivita	P
http://linked.open...avai/riv/aktivity	P(2B06052)
http://linked.open...vai/riv/dodaniDat	2011
http://linked.open...aciTvurceVysledku	Kozubek, Michal Daněk, Ondřej Maška, Martin Matula, Pavel Matula, Petr
http://linked.open.../riv/druhVysledku	D - Článek ve sborníku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Masarykova univerzita / Fakulta informatiky
http://linked.open...dnocenehoVysledku	301809
http://linked.open...ai/riv/idVysledku	RIV/00216224:14330/09:00035583
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	free software; fluorescence microscopy; image acqusition; 3D image analysis; image cytometry (en)
http://linked.open.../riv/klicoveSlovo	3D image analysis free software image cytometry image acqusition fluorescence microscopy
http://linked.open...ontrolniKodProRIV	[9991ED75D978]
http://linked.open...v/mistoKonaniAkce	Boston
http://linked.open...i/riv/mistoVydani	Boston
http://linked.open...i/riv/nazevZdroje	IEEE International Symposium on Biomedical Imaging
http://linked.open...in/vavai/riv/obor	JC
http://linked.open...ichTvurcuVysledku	5 (xsd:int)
http://linked.open...cetTvurcuVysledku	5 (xsd:int)
http://linked.open...vavai/riv/projekt	Determination of markers, screening and early diagnostics of cancer diseases using highly automated processing of multidimensional biomedical images
http://linked.open...UplatneniVysledku	2009
http://linked.open...iv/tvurceVysledku	Daněk, Ondřej Matula, Pavel Maška, Martin Kozubek, Michal Matula, Petr
http://linked.open...vavai/riv/typAkce	WRD - Světová
http://linked.open...ain/vavai/riv/wos	000270678400290
http://linked.open.../riv/zahajeniAkce	2009-06-28 (xsd:date)
issn	1945-7936
number of pages	4 (xsd:int)
http://purl.org/ne...btex#hasPublisher	IEEE
https://schema.org/isbn	978-1-4244-3932-4
http://localhost/t...ganizacniJednotka	14330

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