About: Next-generation sequencing and genome characterization of red clover and its wild relative zig-zag clover

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About: Next-generation sequencing and genome characterization of red clover and its wild relative zig-zag clover Goto Sponge NotDistinct Permalink

An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	The genus Trifolium is classified taxonomically into the agronomically outstanding Fabaceae family. It comprises species known as clovers, both wild and cultivated. Recently, interspecific hybridization of tetraploid red clover with related wild octoploid zig-zag clover (T. medium) has been used for the introgression of useful traits into red clover. De novo assembly of the T. pratense genome after Illumina sequencing was achieved. The current assembly comprises ~314.6 Mbp of draft nucleotide sequence. Overall, 47398 protein coding genes were annotated from 64761 predicted genes. Resistance genes, genes for leghemoglobins and nodule-specific cystein-rich peptides were identified. Sequencing data of T. medium were obtained with average genome coverage 20.7x (x = 3.5 Gbp). Species-specific SNP calling for coding sequences was performed and over 924837 SNPs between parental genotypes used for hybridization were discovered. Species-specific DNA markers for T. pratense (23299) and T. The genus Trifolium is classified taxonomically into the agronomically outstanding Fabaceae family. It comprises species known as clovers, both wild and cultivated. Recently, interspecific hybridization of tetraploid red clover with related wild octoploid zig-zag clover (T. medium) has been used for the introgression of useful traits into red clover. De novo assembly of the T. pratense genome after Illumina sequencing was achieved. The current assembly comprises ~314.6 Mbp of draft nucleotide sequence. Overall, 47398 protein coding genes were annotated from 64761 predicted genes. Resistance genes, genes for leghemoglobins and nodule-specific cystein-rich peptides were identified. Sequencing data of T. medium were obtained with average genome coverage 20.7x (x = 3.5 Gbp). Species-specific SNP calling for coding sequences was performed and over 924837 SNPs between parental genotypes used for hybridization were discovered. Species-specific DNA markers for T. pratense (23299) and T. (en)
Title	Next-generation sequencing and genome characterization of red clover and its wild relative zig-zag clover Next-generation sequencing and genome characterization of red clover and its wild relative zig-zag clover (en)
skos:prefLabel	Next-generation sequencing and genome characterization of red clover and its wild relative zig-zag clover Next-generation sequencing and genome characterization of red clover and its wild relative zig-zag clover (en)
skos:notation	RIV/00216224:14310/14:00073258!RIV15-MSM-14310___
http://linked.open...avai/riv/aktivita	P S
http://linked.open...avai/riv/aktivity	P(EE2.4.31.0155), P(QI111A019), S
http://linked.open...vai/riv/dodaniDat	2015
http://linked.open...aciTvurceVysledku	Simandlová, Jana Řepková, Jana Ištvánek, Jan
http://linked.open.../riv/druhVysledku	D - Článek ve sborníku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Masarykova univerzita / Přírodovědecká fakulta
http://linked.open...dnocenehoVysledku	32570
http://linked.open...ai/riv/idVysledku	RIV/00216224:14310/14:00073258
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	Trifolium pratense; Trifolium medium; de novo sequencing; SNP; SSR (en)
http://linked.open.../riv/klicoveSlovo	SNP SSR Trifolium medium Trifolium pratense de novo sequencing
http://linked.open...ontrolniKodProRIV	[39DE5B77C0E0]
http://linked.open...v/mistoKonaniAkce	Cambridge, UK
http://linked.open...i/riv/mistoVydani	United Kingdom
http://linked.open...i/riv/nazevZdroje	International Conference on ENHANCED GENEPOOL UTILIZATION - Capturing wild relative and landrace diversity for crop improvement, Cambridge, United Kingdom, 16-20 June 2014. Book of Abstracts.
http://linked.open...in/vavai/riv/obor	EB
http://linked.open...ichTvurcuVysledku	3 (xsd:int)
http://linked.open...cetTvurcuVysledku	5 (xsd:int)
http://linked.open...vavai/riv/projekt	New genomic technology for the alogamic cultivated plant breeding for improving utility traits. Partnerství a sítě pro spolupráci v experimentální biologii
http://linked.open...UplatneniVysledku	2014
http://linked.open...iv/tvurceVysledku	Nedělník, Jan Jakešová, Hana Řepková, Jana Ištvánek, Jan Dluhošová, Jana
http://linked.open...vavai/riv/typAkce	WRD - Světová
http://linked.open.../riv/zahajeniAkce	2014-01-01 (xsd:date)
number of pages	2 (xsd:int)
http://purl.org/ne...btex#hasPublisher	Bioversity International, Rome, Italy
https://schema.org/isbn	9789290439950
http://localhost/t...ganizacniJednotka	14310

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