About: Structure, diversity and evolutionary patterns of expressed MHC class IIB genes in chub (Squalius cephalus), a cyprinid fish species from Europe

Facets (new session)
Description
Metadata
Settings
- owl:sameAs
- Inference Rule:

About: Structure, diversity and evolutionary patterns of expressed MHC class IIB genes in chub (Squalius cephalus), a cyprinid fish species from Europe Goto Sponge NotDistinct Permalink

An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

Attributes	Values
rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	The polymorphism of exon 2 of the DAB genes (MHC class IIB) was investigated in the freshwater cyprinid fish species, Squalius cephalus in the wide range of its distribution in Europe. We identified 111 different DAB variants in 15 chub populations. The sequence analysis showed that many structurally important amino acid sites that were conserved among tetrapods were also conserved in chub. The analysis of recombination indicated that it does not play an important role in producing and maintaining the variation of DAB genes analyzed in the present study. The exon 2 was shown to be subjected to intense positive selection. Phylogenetic analysis and sequence identities suggest the presence of two class IIB loci in chub. A contrasting selection pattern was found in DAB1-like and DAB3-like genes, which suggests the potential functional differences between these genes. The polymorphism of exon 2 of the DAB genes (MHC class IIB) was investigated in the freshwater cyprinid fish species, Squalius cephalus in the wide range of its distribution in Europe. We identified 111 different DAB variants in 15 chub populations. The sequence analysis showed that many structurally important amino acid sites that were conserved among tetrapods were also conserved in chub. The analysis of recombination indicated that it does not play an important role in producing and maintaining the variation of DAB genes analyzed in the present study. The exon 2 was shown to be subjected to intense positive selection. Phylogenetic analysis and sequence identities suggest the presence of two class IIB loci in chub. A contrasting selection pattern was found in DAB1-like and DAB3-like genes, which suggests the potential functional differences between these genes. (en)
Title	Structure, diversity and evolutionary patterns of expressed MHC class IIB genes in chub (Squalius cephalus), a cyprinid fish species from Europe Structure, diversity and evolutionary patterns of expressed MHC class IIB genes in chub (Squalius cephalus), a cyprinid fish species from Europe (en)
skos:prefLabel	Structure, diversity and evolutionary patterns of expressed MHC class IIB genes in chub (Squalius cephalus), a cyprinid fish species from Europe Structure, diversity and evolutionary patterns of expressed MHC class IIB genes in chub (Squalius cephalus), a cyprinid fish species from Europe (en)
skos:notation	RIV/00216224:14310/11:00049665!RIV12-GA0-14310___
http://linked.open...avai/riv/aktivita	P S Z
http://linked.open...avai/riv/aktivity	P(GA524/07/0188), P(LC522), S, Z(MSM0021622416)
http://linked.open...iv/cisloPeriodika	3
http://linked.open...vai/riv/dodaniDat	2012
http://linked.open...aciTvurceVysledku	Vetešníková Šimková, Andrea Seifertová, Mária
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Masarykova univerzita / Přírodovědecká fakulta
http://linked.open...dnocenehoVysledku	232800
http://linked.open...ai/riv/idVysledku	RIV/00216224:14310/11:00049665
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	MHC class IIB genes; Cyprinidae; Selection; Recombination; Polymorphism (en)
http://linked.open.../riv/klicoveSlovo	Recombination Cyprinidae MHC class IIB genes Polymorphism Selection
http://linked.open...odStatuVydavatele	CZ - Česká republika
http://linked.open...ontrolniKodProRIV	[9355FF332087]
http://linked.open...i/riv/nazevZdroje	Immunogenetics
http://linked.open...in/vavai/riv/obor	EC
http://linked.open...ichTvurcuVysledku	2 (xsd:int)
http://linked.open...cetTvurcuVysledku	2 (xsd:int)
http://linked.open...vavai/riv/projekt	The role of immune investment in the context of trade-offs: immuno-ecological study of the relationships among reproduction, immunity and parasitism ICHTHYOPASITOLOGY RESEARCH CENTRE
http://linked.open...UplatneniVysledku	2011
http://linked.open...v/svazekPeriodika	63
http://linked.open...iv/tvurceVysledku	Vetešníková Šimková, Andrea Seifertová, Mária
http://linked.open...ain/vavai/riv/wos	000287148700004
http://linked.open...n/vavai/riv/zamer	Diversity of Biotic Communities and Populations: Causal Analysis of variation in space and time
issn	0093-7711
number of pages	15 (xsd:int)
http://bibframe.org/vocab/doi	10.1007/s00251-010-0495-3
http://localhost/t...ganizacniJednotka	14310

Faceted Search & Find service v1.16.118 as of Jun 21 2024

Alternative Linked Data Documents: ODE Content Formats:

RDF

ODATA

Microdata

About

OpenLink Virtuoso version 07.20.3240 as of Jun 21 2024, on Linux (x86_64-pc-linux-gnu), Single-Server Edition (126 GB total memory, 48 GB memory in use)
Data on this page belongs to its respective rights holders.
Virtuoso Faceted Browser Copyright © 2009-2024 OpenLink Software