About: TRITON 4 : software for ligand-binding protein engineering

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An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	The program TRITON 4 is a graphical tool for computer-aided protein engineering. It implements methodology of computational site-directed mutagenesis to design new protein mutants with required properties. It uses the external program MODELLER to model structures of new protein mutants based on the wild-type structure by homology modelling method. Ligand binding properties of the mutants can be studied by docking methodology using the external program AutoDock. Ligand binding modes and affinities of individual protein mutants are obtained as a result. Binding properties can also be analyzed by visualization of affinity maps or by calculation of electrostatic potential between ligand and individual residues of binding site. The program TRITON 4 offers graphical tools for preparation of the input files and for visualization of output data. The program uses projects to organize computational data. The program TRITON 4 is available for Linux operating system. The program TRITON 4 is a graphical tool for computer-aided protein engineering. It implements methodology of computational site-directed mutagenesis to design new protein mutants with required properties. It uses the external program MODELLER to model structures of new protein mutants based on the wild-type structure by homology modelling method. Ligand binding properties of the mutants can be studied by docking methodology using the external program AutoDock. Ligand binding modes and affinities of individual protein mutants are obtained as a result. Binding properties can also be analyzed by visualization of affinity maps or by calculation of electrostatic potential between ligand and individual residues of binding site. The program TRITON 4 offers graphical tools for preparation of the input files and for visualization of output data. The program uses projects to organize computational data. The program TRITON 4 is available for Linux operating system. (en)
Title	TRITON 4 : software for ligand-binding protein engineering TRITON 4 : software for ligand-binding protein engineering (en)
skos:prefLabel	TRITON 4 : software for ligand-binding protein engineering TRITON 4 : software for ligand-binding protein engineering (en)
skos:notation	RIV/00216224:14310/09:00029247!RIV10-MSM-14310___
http://linked.open...avai/riv/aktivita	P Z
http://linked.open...avai/riv/aktivity	P(GA303/09/1168), P(LC06030), Z(MSM0021622413)
http://linked.open...vai/riv/dodaniDat	2010
http://linked.open...aciTvurceVysledku	Prokop, Martin Adam, Jan Koča, Jaroslav Wimmerová, Michaela Kříž, Zdeněk
http://linked.open.../riv/druhVysledku	R - Software
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Masarykova univerzita / Přírodovědecká fakulta
http://linked.open...dnocenehoVysledku	346996
http://linked.open...ai/riv/idVysledku	RIV/00216224:14310/09:00029247
http://linked.open...terniIdentifikace	TRITON 4
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	graphical software; protein engineering; protein-ligand docking (en)
http://linked.open.../riv/klicoveSlovo	protein-ligand docking graphical software protein engineering
http://linked.open...ontrolniKodProRIV	[71E03B0F17C6]
http://linked.open...okalizaceVysledku	http://ncbr.chemi.muni.cz/triton/
http://linked.open...in/vavai/riv/obor	CE
http://linked.open...ichTvurcuVysledku	5 (xsd:int)
http://linked.open...cetTvurcuVysledku	5 (xsd:int)
http://linked.open...vavai/riv/projekt	Lectins from human pathogens - structure, function, engineering Biomolecular centre
http://linked.open...UplatneniVysledku	2009
http://linked.open...echnickeParametry	software pro proteinove inzenyrstvi
http://linked.open...iv/tvurceVysledku	Adam, Jan Koča, Jaroslav Wimmerová, Michaela Prokop, Martin Kříž, Zdeněk
http://linked.open...avai/riv/vlastnik	Masarykova univerzita
http://linked.open...itiJinymSubjektem	N - Nabytí licence není nutné (výsledek není licencován)
http://linked.open...n/vavai/riv/zamer	Proteiny v metabolismu a při interakci organismů s prostředím
http://localhost/t...ganizacniJednotka	14310

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