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Description
  • We have generalized a method for tandem mass spectra interpretation, based on the parameterized Hausdorff distance. Instead of just peptides (short pieces of proteins), in this paper we describe the interpretation of whole protein sequences. For this purpose, we employ the recently introduced NM-tree to index the database of hypothetical mass spectra for exact or fast approximate search. The NM-tree combines the M-tree with the TriGen algorithm in a way that allows to dynamically control the retrieval precision at query time. A scheme for protein sequences identification using the NM-tree is proposed.
  • We have generalized a method for tandem mass spectra interpretation, based on the parameterized Hausdorff distance. Instead of just peptides (short pieces of proteins), in this paper we describe the interpretation of whole protein sequences. For this purpose, we employ the recently introduced NM-tree to index the database of hypothetical mass spectra for exact or fast approximate search. The NM-tree combines the M-tree with the TriGen algorithm in a way that allows to dynamically control the retrieval precision at query time. A scheme for protein sequences identification using the NM-tree is proposed. (en)
Title
  • Protein Sequences Identification using NM-tree
  • Protein Sequences Identification using NM-tree (en)
skos:prefLabel
  • Protein Sequences Identification using NM-tree
  • Protein Sequences Identification using NM-tree (en)
skos:notation
  • RIV/00216208:11320/11:10099582!RIV12-GA0-11320___
http://linked.open...avai/riv/aktivita
http://linked.open...avai/riv/aktivity
  • P(GAP202/11/0968), P(GD201/09/H057), S
http://linked.open...vai/riv/dodaniDat
http://linked.open...aciTvurceVysledku
http://linked.open.../riv/druhVysledku
http://linked.open...iv/duvernostUdaju
http://linked.open...titaPredkladatele
http://linked.open...dnocenehoVysledku
  • 224816
http://linked.open...ai/riv/idVysledku
  • RIV/00216208:11320/11:10099582
http://linked.open...riv/jazykVysledku
http://linked.open.../riv/klicovaSlova
  • NM-tree; using; Identification; Sequences; Protein (en)
http://linked.open.../riv/klicoveSlovo
http://linked.open...ontrolniKodProRIV
  • [88CA6C308D92]
http://linked.open...v/mistoKonaniAkce
  • Lipari, Italy
http://linked.open...i/riv/mistoVydani
  • New York, USA
http://linked.open...i/riv/nazevZdroje
  • Fourth International Conference on Similarity Search and Applications 2011
http://linked.open...in/vavai/riv/obor
http://linked.open...ichTvurcuVysledku
http://linked.open...cetTvurcuVysledku
http://linked.open...vavai/riv/projekt
http://linked.open...UplatneniVysledku
http://linked.open...iv/tvurceVysledku
  • Lokoč, Jakub
  • Novák, Jiří
  • Skopal, Tomáš
  • Hoksza, David
  • Galgonek, Jakub
http://linked.open...vavai/riv/typAkce
http://linked.open.../riv/zahajeniAkce
number of pages
http://bibframe.org/vocab/doi
  • 10.1145/1995412.1995440
http://purl.org/ne...btex#hasPublisher
  • ACM
https://schema.org/isbn
  • 978-1-4503-0795-6
http://localhost/t...ganizacniJednotka
  • 11320
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