About: Exploration of Nuclear DNA Markers for Population Structure Assessment in the Desmid Micrasterias rotata (Zygnematophyceae, Streptophyta)

Facets (new session)
Description
Metadata
Settings
- owl:sameAs
- Inference Rule:

About: Exploration of Nuclear DNA Markers for Population Structure Assessment in the Desmid Micrasterias rotata (Zygnematophyceae, Streptophyta) Goto Sponge NotDistinct Permalink

An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

Attributes	Values
rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
rdfs:seeAlso	http://dx.doi.org/10.1111/jeu.12130
Description	Freshwater green microalgae are diverse and widely distributed across the globe, yet the population structuring of these organisms is poorly understood. We assessed the degree of genetic diversity and differentiation of the desmid species, Micrasterias rotata. First, we compared the sequences of four nuclear regions (actin, gapC1, gapC2, and oee1) in 25 strains and selected the gapC1 and actin regions as the most appropriate markers for population structure assessment in this species. Population genetic structure was subsequently analyzed, based on seven populations from the Czech Republic and Ireland. Hudson's Snn statistics indicated that nearest-neighbor sequences occurred significantly more frequently within geographical populations than within the wider panmictic population. Moreover, Irish populations consistently showed higher genetic diversity than the Czech samples. These results are in accordance with the unbalanced distribution of alleles in many land plant species; however, the large genetic diversity in M. rotata differs from levels of genetic diversity found in most land plants. Freshwater green microalgae are diverse and widely distributed across the globe, yet the population structuring of these organisms is poorly understood. We assessed the degree of genetic diversity and differentiation of the desmid species, Micrasterias rotata. First, we compared the sequences of four nuclear regions (actin, gapC1, gapC2, and oee1) in 25 strains and selected the gapC1 and actin regions as the most appropriate markers for population structure assessment in this species. Population genetic structure was subsequently analyzed, based on seven populations from the Czech Republic and Ireland. Hudson's Snn statistics indicated that nearest-neighbor sequences occurred significantly more frequently within geographical populations than within the wider panmictic population. Moreover, Irish populations consistently showed higher genetic diversity than the Czech samples. These results are in accordance with the unbalanced distribution of alleles in many land plant species; however, the large genetic diversity in M. rotata differs from levels of genetic diversity found in most land plants. (en)
Title	Exploration of Nuclear DNA Markers for Population Structure Assessment in the Desmid Micrasterias rotata (Zygnematophyceae, Streptophyta) Exploration of Nuclear DNA Markers for Population Structure Assessment in the Desmid Micrasterias rotata (Zygnematophyceae, Streptophyta) (en)
skos:prefLabel	Exploration of Nuclear DNA Markers for Population Structure Assessment in the Desmid Micrasterias rotata (Zygnematophyceae, Streptophyta) Exploration of Nuclear DNA Markers for Population Structure Assessment in the Desmid Micrasterias rotata (Zygnematophyceae, Streptophyta) (en)
skos:notation	RIV/00216208:11310/14:10288882!RIV15-MSM-11310___
http://linked.open...avai/riv/aktivita	I S
http://linked.open...avai/riv/aktivity	I, S
http://linked.open...iv/cisloPeriodika	5
http://linked.open...vai/riv/dodaniDat	2015
http://linked.open...aciTvurceVysledku	Škaloud, Pavel Nemjová, Katarína Veselá, Jana Bestová, Helena
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Univerzita Karlova v Praze / Přírodovědecká fakulta
http://linked.open...dnocenehoVysledku	16092
http://linked.open...ai/riv/idVysledku	RIV/00216208:11310/14:10288882
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	oxygen evolving factor; oee1; green algae; glyceraldehyde-3-phosphate dehydrogenase; genetic diversity; genetic differentiation; gapC; Actin (en)
http://linked.open.../riv/klicoveSlovo	Actin genetic differentiation green algae genetic diversity gapC glyceraldehyde-3-phosphate dehydrogenase oee1 oxygen evolving factor
http://linked.open...odStatuVydavatele	US - Spojené státy americké
http://linked.open...ontrolniKodProRIV	[FB3D7B3DFFA0]
http://linked.open...i/riv/nazevZdroje	Journal of Eukaryotic Microbiology
http://linked.open...in/vavai/riv/obor	EF
http://linked.open...ichTvurcuVysledku	4 (xsd:int)
http://linked.open...cetTvurcuVysledku	5 (xsd:int)
http://linked.open...UplatneniVysledku	2014
http://linked.open...v/svazekPeriodika	61
http://linked.open...iv/tvurceVysledku	Škaloud, Pavel Kulichová, Jana Leliaert, Frederik Bestová, Helena Jurdíková, Katarína
http://linked.open...ain/vavai/riv/wos	000341623600005
issn	1066-5234
number of pages	11 (xsd:int)
http://bibframe.org/vocab/doi	10.1111/jeu.12130
http://localhost/t...ganizacniJednotka	11310

Faceted Search & Find service v1.16.118 as of Jun 21 2024

Alternative Linked Data Documents: ODE Content Formats:

RDF

ODATA

Microdata

About

OpenLink Virtuoso version 07.20.3240 as of Jun 21 2024, on Linux (x86_64-pc-linux-gnu), Single-Server Edition (126 GB total memory, 48 GB memory in use)
Data on this page belongs to its respective rights holders.
Virtuoso Faceted Browser Copyright © 2009-2024 OpenLink Software