About: SNPman: a program for genotype calling using run data from TaqMan allelic discrimination

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About: SNPman: a program for genotype calling using run data from TaqMan allelic discrimination Goto Sponge NotDistinct Permalink

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Attributes	Values
rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
rdfs:seeAlso	http://bioinformatics.oxfordjournals.org/
Description	The SNPman program calls the genotypes of single nucleotide polymorphisms (SNP) from TaqMan allelic discrimination assays. It utilizes the fluorescence data collected over the whole PCR run, rather than relying on the end point fluorescence measurements that is the basis of the genotype calling process in most software solutions sold with the real-time instruments. This inspection of run data facilitates genotype calls in difficult sample sets, especially in those containing various concentrations of DNA or inhibitors, as indicated by results of a reanalysis of 3738 genotyping samples. The program works with data from three different widely used PCR instruments. The SNPman program calls the genotypes of single nucleotide polymorphisms (SNP) from TaqMan allelic discrimination assays. It utilizes the fluorescence data collected over the whole PCR run, rather than relying on the end point fluorescence measurements that is the basis of the genotype calling process in most software solutions sold with the real-time instruments. This inspection of run data facilitates genotype calls in difficult sample sets, especially in those containing various concentrations of DNA or inhibitors, as indicated by results of a reanalysis of 3738 genotyping samples. The program works with data from three different widely used PCR instruments. (en)
Title	SNPman: a program for genotype calling using run data from TaqMan allelic discrimination SNPman: a program for genotype calling using run data from TaqMan allelic discrimination (en)
skos:prefLabel	SNPman: a program for genotype calling using run data from TaqMan allelic discrimination SNPman: a program for genotype calling using run data from TaqMan allelic discrimination (en)
skos:notation	RIV/00064203:_____/11:7026!RIV12-MZ0-00064203
http://linked.open...avai/riv/aktivita	I
http://linked.open...avai/riv/aktivity	I
http://linked.open...iv/cisloPeriodika	16
http://linked.open...vai/riv/dodaniDat	2012
http://linked.open...aciTvurceVysledku	Cinek, Ondřej Dušátková, Petra
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Fakultní nemocnice v Motole
http://linked.open...dnocenehoVysledku	230137
http://linked.open...ai/riv/idVysledku	RIV/00064203:_____/11:7026
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology; Computer Science; Mathematical & Computational Biology; Mathematics (en)
http://linked.open.../riv/klicoveSlovo	Mathematics Biochemistry & Molecular Biology Biotechnology & Applied Microbiology Mathematical & Computational Biology Computer Science
http://linked.open...odStatuVydavatele	GB - Spojené království Velké Británie a Severního Irska
http://linked.open...ontrolniKodProRIV	[BA8331B78D14]
http://linked.open...i/riv/nazevZdroje	Bioinformatics
http://linked.open...in/vavai/riv/obor	CE
http://linked.open...ichTvurcuVysledku	2 (xsd:int)
http://linked.open...cetTvurcuVysledku	3 (xsd:int)
http://linked.open...UplatneniVysledku	2011
http://linked.open...v/svazekPeriodika	27
http://linked.open...iv/tvurceVysledku	Cinek, Ondřej Dušátková, Petra Konopáč, Martin
http://linked.open...ain/vavai/riv/wos	000293620800022
issn	1367-4803
number of pages	3 (xsd:int)

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