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  • Generalized and weighted strings are special strings capable of expressing variability and uncertainity of appearance of a symbol in a given position. These types of strings are mainly used in molecular biology. In this paper we present a finite state automata approach for solving various pattern matching problems. We present the Generalized Factor Automaton (GFA), a novel structure for indexing generalized strings. We show how to use GFA for substring searching and searching maximum repeating factors in generalized strings. Finally, we show how to transform the finite automaton for a given pattern matching problem on strings to an automaton for the pattern matching problem on generalized strings.
  • Generalized and weighted strings are special strings capable of expressing variability and uncertainity of appearance of a symbol in a given position. These types of strings are mainly used in molecular biology. In this paper we present a finite state automata approach for solving various pattern matching problems. We present the Generalized Factor Automaton (GFA), a novel structure for indexing generalized strings. We show how to use GFA for substring searching and searching maximum repeating factors in generalized strings. Finally, we show how to transform the finite automaton for a given pattern matching problem on strings to an automaton for the pattern matching problem on generalized strings. (en)
Title
  • Generalized and Weighted Strings: Repetitions and Pattern Matching
  • Generalized and Weighted Strings: Repetitions and Pattern Matching (en)
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  • Generalized and Weighted Strings: Repetitions and Pattern Matching
  • Generalized and Weighted Strings: Repetitions and Pattern Matching (en)
skos:notation
  • RIV/68407700:21230/04:00109860!RIV12-MSM-21230___
http://linked.open...avai/riv/aktivita
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  • Z(MSM 212300014)
http://linked.open...vai/riv/dodaniDat
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http://linked.open...iv/duvernostUdaju
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  • 565265
http://linked.open...ai/riv/idVysledku
  • RIV/68407700:21230/04:00109860
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  • DNA; generalized factor automaton; generalized strings; pattern matching; repetitions; weighted strings (en)
http://linked.open.../riv/klicoveSlovo
http://linked.open...ontrolniKodProRIV
  • [365963C83882]
http://linked.open...i/riv/mistoVydani
  • London
http://linked.open...i/riv/nazevZdroje
  • Texts in Algorithmics, Volume 2 - String Algorithmics
http://linked.open...in/vavai/riv/obor
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http://linked.open...v/pocetStranKnihy
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  • Melichar, Bořivoj
  • Voráček, Michal
  • Christodoulakis, M.
http://linked.open...n/vavai/riv/zamer
number of pages
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  • King's College
https://schema.org/isbn
  • 1-904987-02-8
http://localhost/t...ganizacniJednotka
  • 21230
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