About: MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes

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About: MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes Goto Sponge NotDistinct Permalink

An Entity of Type : http://linked.opendata.cz/ontology/domain/vavai/Vysledek, within Data Space : linked.opendata.cz associated with source document(s)

Attributes	Values
rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
rdfs:seeAlso	http://nar.oxfordjournals.org/content/early/2014/05/21/nar.gku426.full.pdf+html
Description	Structure validation has become a major issue in the structural biology community, and an essential step is checking the ligand structure. This paper introduces MotiveValidator, a web-based application for the validation of ligands and residues in PDB or PDBx/mmCIF format files provided by the user. Specifically, MotiveValidator is able to evaluate in a straightforward manner whether the ligand or residue being studied has a correct annotation (3-letter code), i.e. if it has the same topology and stereochemistry as the model ligand or residue with this annotation. If not, MotiveValidator explicitly describes the differences. MotiveValidator offers a user-friendly, interactive and platform-independent environment for validating structures obtained by any type of experiment. The results of the validation are presented in both tabular and graphical form, facilitating their interpretation. Structure validation has become a major issue in the structural biology community, and an essential step is checking the ligand structure. This paper introduces MotiveValidator, a web-based application for the validation of ligands and residues in PDB or PDBx/mmCIF format files provided by the user. Specifically, MotiveValidator is able to evaluate in a straightforward manner whether the ligand or residue being studied has a correct annotation (3-letter code), i.e. if it has the same topology and stereochemistry as the model ligand or residue with this annotation. If not, MotiveValidator explicitly describes the differences. MotiveValidator offers a user-friendly, interactive and platform-independent environment for validating structures obtained by any type of experiment. The results of the validation are presented in both tabular and graphical form, facilitating their interpretation. (en)
Title	MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes (en)
skos:prefLabel	MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes (en)
skos:notation	RIV/00216224:14740/14:00075598!RIV15-MSM-14740___
http://linked.open...avai/riv/aktivita	P S
http://linked.open...avai/riv/aktivity	P(ED1.1.00/02.0068), P(EE2.3.20.0042), P(EE2.3.30.0009), P(LH13055), S
http://linked.open...iv/cisloPeriodika	W1
http://linked.open...vai/riv/dodaniDat	2015
http://linked.open...aciTvurceVysledku	Horský, Vladimír Pravda, Lukáš Koča, Jaroslav Wimmerová, Michaela Sehnal, David Geidl, Stanislav Svobodová Vařeková, Radka Ionescu, Crina-Maria Jaiswal, Deepti
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Masarykova univerzita / Středoevropský technologický institut
http://linked.open...dnocenehoVysledku	30645
http://linked.open...ai/riv/idVysledku	RIV/00216224:14740/14:00075598
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	PROTEIN DATA-BANK; CRYSTAL-STRUCTURES; CRYSTALLOGRAPHY; INFORMATION; REFINEMENT; BIOLOGY; ARCHIVE; SERVER (en)
http://linked.open.../riv/klicoveSlovo	ARCHIVE SERVER INFORMATION BIOLOGY PROTEIN DATA-BANK CRYSTAL-STRUCTURES REFINEMENT CRYSTALLOGRAPHY
http://linked.open...odStatuVydavatele	GB - Spojené království Velké Británie a Severního Irska
http://linked.open...ontrolniKodProRIV	[6FE50D55746F]
http://linked.open...i/riv/nazevZdroje	Nucleic Acids Research
http://linked.open...in/vavai/riv/obor	CE
http://linked.open...ichTvurcuVysledku	9 (xsd:int)
http://linked.open...cetTvurcuVysledku	9 (xsd:int)
http://linked.open...vavai/riv/projekt	Multidisciplinary Approach to Drug Design - Inhibition of Carbohydrate Acting Proteins Central european institute of technology Employment of Newly Graduated Doctors of Science for Scientific Excellence Internationalisation of the Structural Biology Research Programme with Emphasis on New Directions in R&D
http://linked.open...UplatneniVysledku	2014
http://linked.open...v/svazekPeriodika	42
http://linked.open...iv/tvurceVysledku	Koča, Jaroslav Wimmerová, Michaela Geidl, Stanislav Ionescu, Crina-Maria Sehnal, David Svobodová Vařeková, Radka Jaiswal, Deepti Pravda, Lukáš Horský, Vladimír
http://linked.open...ain/vavai/riv/wos	000339715000038
issn	0305-1048
number of pages	7 (xsd:int)
http://bibframe.org/vocab/doi	10.1093/nar/gku426
http://localhost/t...ganizacniJednotka	14740

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