About: Vibrational spectroscopy and computer modeling of proteins: solving structure of alpha(1)-acid glycoprotein

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About: Vibrational spectroscopy and computer modeling of proteins: solving structure of alpha(1)-acid glycoprotein Goto Sponge NotDistinct Permalink

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rdf:type	skos:Concept http://linked.opendata.cz/ontology/domain/vavai/Vysledek
Description	This work introduces a new approach connecting vibrational spectroscopy with homology and energetic molecular modeling of proteins. Combination of both methods can compensate their disadvantages and result in realistic three-dimensional protein models. The approach is most powerful for membrane proteins or glycoproteins with high carbohydrate content where X-ray or NMR analysis is not always successful. Nevertheless, it can also serve as a tool of preliminary analysis of any protein with unknown structure. Power of the approach is demonstrated on human alpha(1)-acid glycoprotein. Its predicted structure published in [V. Kopecky Jr. et al., Biochem. Biophys. Res. Commun. 300 (2003), 41-46] is discussed in detail with respect to the approach and its general employment. This work introduces a new approach connecting vibrational spectroscopy with homology and energetic molecular modeling of proteins. Combination of both methods can compensate their disadvantages and result in realistic three-dimensional protein models. The approach is most powerful for membrane proteins or glycoproteins with high carbohydrate content where X-ray or NMR analysis is not always successful. Nevertheless, it can also serve as a tool of preliminary analysis of any protein with unknown structure. Power of the approach is demonstrated on human alpha(1)-acid glycoprotein. Its predicted structure published in [V. Kopecky Jr. et al., Biochem. Biophys. Res. Commun. 300 (2003), 41-46] is discussed in detail with respect to the approach and its general employment. (en) Nové metody pro rychlý odhad struktur proteinu byly vyvíjeny a vysvětleny na příkladu lidského orosomukoidu (cs)
Title	Vibrational spectroscopy and computer modeling of proteins: solving structure of alpha(1)-acid glycoprotein Vibrational spectroscopy and computer modeling of proteins: solving structure of alpha(1)-acid glycoprotein (en) Vibrační spektroskopie a počítačové modelování proteinu: řešení struktury alpha-1-kyselého glykoproteinu (cs)
skos:prefLabel	Vibrational spectroscopy and computer modeling of proteins: solving structure of alpha(1)-acid glycoprotein Vibrational spectroscopy and computer modeling of proteins: solving structure of alpha(1)-acid glycoprotein (en) Vibrační spektroskopie a počítačové modelování proteinu: řešení struktury alpha-1-kyselého glykoproteinu (cs)
skos:notation	RIV/60076658:12640/04:00005714!RIV/2005/GA0/126405/N
http://linked.open.../vavai/riv/strany	323-330
http://linked.open...avai/riv/aktivita	P
http://linked.open...avai/riv/aktivity	P(GP206/03/D082), P(LN00A141)
http://linked.open...iv/cisloPeriodika	2
http://linked.open...vai/riv/dodaniDat	2005
http://linked.open...aciTvurceVysledku	Ettrich, Rüdiger
http://linked.open.../riv/druhVysledku	J - Článek v odborném periodiku
http://linked.open...iv/duvernostUdaju	S - Úplné a pravdivé údaje nepodléhající ochraně podle zvláštních právních předpisů
http://linked.open...titaPredkladatele	Jihočeská univerzita v Českých Budějovicích / Ústav fyzikální biologie
http://linked.open...dnocenehoVysledku	592396
http://linked.open...ai/riv/idVysledku	RIV/60076658:12640/04:00005714
http://linked.open...riv/jazykVysledku	eng - angličtina
http://linked.open.../riv/klicovaSlova	Raman spectroscopy;fourier transform infrared spectroscopy;molecular modeling;orosomucoid;binding site;thermal dynamics (en)
http://linked.open.../riv/klicoveSlovo	orosomucoid thermal dynamics Raman spectroscopy molecular modeling binding site fourier transform infrared spectroscopy
http://linked.open...odStatuVydavatele	NL - Nizozemsko
http://linked.open...ontrolniKodProRIV	[104EA04F8D6C]
http://linked.open...i/riv/nazevZdroje	Spectroscopy - An International Journal
http://linked.open...in/vavai/riv/obor	BO
http://linked.open...ichTvurcuVysledku	1 (xsd:int)
http://linked.open...cetTvurcuVysledku	4 (xsd:int)
http://linked.open...vavai/riv/projekt	Mechanism, ecophysiology and biotechnology of photosynthesis Proteins of oxygen evolving complexes of Photosystem II studied by means of molecular modelling
http://linked.open...UplatneniVysledku	2004
http://linked.open...v/svazekPeriodika	18
http://linked.open...iv/tvurceVysledku	Hofbauerová, Kateřina Kopecký, Vladimír Baumruk, Vladimír Ettrich, Rudiger Horst
issn	0712-4813
number of pages	8 (xsd:int)
http://localhost/t...ganizacniJednotka	12640

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